<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31257

Description Uncharacterized protein
SequenceMQLLQHPARPAIADLFTLYLGVNSKQGAEDPARETSNKLQKRVSAHNRDLPPRDEQFISDFEQLCVPFPDQEQLQAVTESVLISFVLQCSSHAPQSQFLLFATRCLCARGHLRWDSLIPSLLSVVSSAEAPMGQGGSVTFGGPVSSSSAIAVPNAPSFHASNPTSPLSAMNTIGSPTQSGIDQPVGANVSPMKAAEFSTLGQPGTTSRGDQSRRGAQVSYLHHLSCRIILAGLESNLKPATHAAIFHHMVNWLVNWDQRPHGVDEADTVQTSRIGRPVHEWMHLCLDVIWILVDEEKCRIPFYELVRSNLQFLENIPDDDAVICIIMEIHRRRDMVCMHMQMLDQHLHCPTFGTHRFLSQSYPSIAGESVANLRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRSHSQTSTPGAVFSPDMIGEAVADRTIELLKLTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNGDQQILRSNHVTWLLAQIIRIEIVMNTLSSDPRKELCKGLKLGSAFAVPNLLYRRDPGGKGSIALYMVQMSLLSLVNMMVEEELLEIVETTRKIISFHKEDKSLDPNNISPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMTKASGERMIDFMNLDERAMGMFWVLSFTMAQPACDAVMTWFTSAGGAEFMQGPNMQPNERVTMMHETYPLSMALLSGLSINLCLKLAYQLEETIFLGQAVPSIAMVETYVRLLLITPHSLFRPHFTSFRKSSKSASFVDYIIVSWKKQGIDGPTEFTETLNRITIISLAITIKTRGIAEVEHMVYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLTVRADKRGQAIQAWQQARVLREFSPEEVTANIYTMVDVLLHHIQLELQRGHLVQDLLSKAITNLAFFVWTHELVPLDIVLLALIDRDDDPYALRLVFLKHAQVV
Length985
PositionTail
OrganismTriticum urartu (Red wild einkorn) (Crithodium urartu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.08
Grand average of hydropathy-0.071
Instability index45.52
Isoelectric point6.11
Molecular weight111149.72
Publications
PubMed=23535596

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31257
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.64|      13|      16|     356|     368|       1
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  356-  368 (24.35/17.02)	RFLSQSYPSIAGE
  374-  386 (25.28/17.99)	RYSPITYPSVLGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.25|      16|      17|     169|     184|       2
---------------------------------------------------------------------------
  169-  184 (28.02/18.85)	A.MNTIGSPTQSGIDQP
  187-  203 (22.23/13.22)	AnVSPMKAAEFSTLGQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     167.92|      38|     274|     622|     659|       4
---------------------------------------------------------------------------
  622-  659 (61.35/30.42)	ILLDFISSSQTLRIWS......FNTSIREHLNSDQLQKGKQIDE
  853-  894 (51.06/24.32)	LLEQIMATSQ..HTWSektlryFPPLIRDFLTVRADKRGQAIQA
  900-  936 (55.51/26.96)	VLREFSPEEVTANIYT......MVDVLLHHIQL.ELQRGHLVQD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.79|      27|     229|     251|     292|       8
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  252-  292 (42.87/60.98)	WlvnWDQrphgvdeadtvQTSRIGRPVHEWMHL...CLDVIWIL
  660-  689 (48.91/28.42)	W...WKQ...........MTKASGERMIDFMNLderAMGMFWVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     187.41|      54|     378|      87|     140|      10
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   87-  140 (95.14/57.77)	LQCSSHAPQSQFLLFATR..CLCARGHLRWDSLIPSLLSVVSSAEAPMGQGGSVTF
  466-  521 (92.27/55.81)	LTNSETQCWQDWLLFADIffFLMKSGCIDFLDFVDKLASRVTNGDQQILRSNHVTW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31257 with Med23 domain of Kingdom Viridiplantae
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