<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31256

Description Uncharacterized protein
SequenceMLLCWLAPLLNTLLMVNLMPRYAPDSQEAQRFVANFEEVAFRGTNSKEDYMRNISSKLLIMEKKTSGLLERRMQLRSQLQLANTAQALQGGNPSVRPEAGMMATPGPTSQPMTPQTSGLVPNQHMVYPRNTNLQTEVEQKHPGIRTIPDQCPKFQPKGITTVGPGVSLWQMQSGANQSQSQHASRQTQTTNFVGCSPPSVSKTAGGPNSLQNHLLGQNGSSVGKQQPQLTRMNQRSSRANQQERDMQKYQMLGAQQTDISKMQPNQLGGCNNQKDTRQTNLLRSPVEASEHEPMTPPLQQIAGAQQSTLLCQNSQNTAMMGSARECDLIEGMFSQIKSWKDAYFSQFVELERRVVIPTLTEEQFLSLPAAKANEYKRKAYAKRSIRKILNFLLLEKSDVNEGLKSDFPKYKEDVQKLVAYIERGKAHNAEMNTGYQLRNCREEPQVINLTGNASSISGGKSRQQKQPADTSILPSRQTNMARTPPPHEQSNGNHLLGIASPFSSPGSLPSCSSSMLESLTPSPVANPVIAPASRCDPLIPMDVDSISAFLLHGNSAAPAPKANDSNQVTPTKPTLPASPRQADIAAGQAEVQAGGGDRTPVTEKPIDRLMAAIRSSSPAALRSSANSIWSVLSIRDTVPHGQIGTVLDGTFSQQQRGGSNTARKMKRVFNDTAAHSESLLLGSMDGSCMTFECDASDSGSSSEQNIKRLKTQNANDALLKEIKTINDTLIDTVVSISMDGIVPYDGGTTIKLSYSAVSLSPTVKSLFATSEMYLVLPVKFFVPADYPSSSPVPISDEGDEVPRRNSSTISASVDVAFRHALRGLLEPWSIEAVARAWDACVRKAVTQFAQQLGGGTVNSIFGGWERCTAA
Length870
PositionTail
OrganismTriticum urartu (Red wild einkorn) (Crithodium urartu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.05
Grand average of hydropathy-0.478
Instability index55.92
Isoelectric point8.92
Molecular weight94545.82
Publications
PubMed=23535596

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31256
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.99|      31|      34|     493|     526|       1
---------------------------------------------------------------------------
  495-  526 (52.58/32.27)	LLGIAS...PFsSPGSLPSCSSSML..ESLTPSPVAN
  528-  563 (42.41/16.40)	VIAPASrcdPL.IPMDVDSISAFLLhgNSAAPAPKAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     205.95|      53|      55|     129|     181|       2
---------------------------------------------------------------------------
   93-  125 (38.09/15.04)	.............PSVR..PE.......AGmMATPGPtSQPMTPQT........SGLVPNQHM
  129-  181 (94.28/48.28)	RNTNLQTEVEQKHPGIRTIPDQCPKFQPKG.ITTVGP.GVSLWQMQ........SGANQSQSQ
  185-  243 (73.59/36.04)	RQTQTTNFVGCSPPSVSKTAGGPNSLQNHL.LGQNGS.SVGKQQPQltrmnqrsSRANQQE..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.97|      30|     188|     268|     303|       3
---------------------------------------------------------------------------
  272-  303 (48.16/37.34)	NQKDTRQTNLLrsPVEASEHEPMTPPLQQIAG
  463-  492 (54.80/25.91)	QQKQPADTSIL..PSRQTNMARTPPPHEQSNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.34|      33|      57|     734|     767|       4
---------------------------------------------------------------------------
  734-  767 (52.07/38.10)	VSISMDG.IVPYDGGTTIKLSYSaVSLSPTVKSLF
  792-  825 (51.27/32.85)	VPISDEGdEVPRRNSSTISASVD.VAFRHALRGLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.60|      22|      32|     564|     586|       5
---------------------------------------------------------------------------
  564-  586 (34.59/25.34)	DSNQVTpTKP..TLPASPRQADIAA
  597-  620 (32.01/17.90)	DRTPVT.EKPidRLMAAIRSSSPAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.03|      13|      34|     636|     649|       6
---------------------------------------------------------------------------
  636-  649 (21.00/18.12)	DTVPHGQ...IGTvLDG
  671-  686 (19.02/10.61)	DTAAHSEsllLGS.MDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.22|      18|      38|     650|     667|       7
---------------------------------------------------------------------------
  650-  667 (31.95/18.46)	TF.SQQQRGGSNTARKMKR
  690-  708 (27.27/14.66)	TFeCDASDSGSSSEQNIKR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31256 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LLHGNSAAPAPKANDSNQVTPTKPTLPASPRQADIAAGQAEVQAGGGDRTPVTEKPIDRLMAAIRS
2) NLTGNASSISGGKSRQQKQPADTSILPSRQTNMARTPPPHEQSNGNHLLGIASPFS
3) QLANTAQALQGGNPSVRPEAGMMATPGPTSQPMTPQTSGLVPNQHMVYPRNTNLQTEVEQKHPGIRTIPDQCPKFQPKGITTVGPGVSLWQMQSGANQSQSQHASRQTQTTNFVGCSPPSVSKTAGGPNSLQNHLLGQNGSSVGKQQPQLTRMNQRSSRANQQERDMQKYQMLGAQQTDISKMQPNQLGGCNNQKDTRQTNLLRSPVEASEHEPMTPPLQQIAGAQQ
550
448
80
615
503
306










Molecular Recognition Features






MoRF SequenceStartStop




NANANA