<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31254

Description U-box domain-containing protein 52
SequenceMAAEGDEEGAAPKVVGLALSGPKSSAYVLRWALRNFAQDDAPPAEFKLIHVLTPVLAVPTPLGHLLPIDEVSTSVAEGELEKMWIEKQEMLQRCKDTCDENKVEAQVLLVEGKDVADTISSLVSQYQIKNLVVGNPPSKSPFTRRSTASRTACKICKSLPSFCTAYVVSKDGLSSVHVPESESGSPSGSPVPKGNSGSSSTKEFTDGTSSRSDLDGSSAPGLPSFTLNDYLTGNAPVYANMDRRIASPTGAESSILSQFRGSDKVPTSSLQELMLSDNKDDVSTELGKLNLEPSHNRLLATASKDADRESRLEKPLVLPSDSYSMFTWEEIDNATASFSLKIGTGSNGTVYKGHLNHLDVAIKVLHSDDKSSTRHFNQELEVLSKIRHPHLLMLLGACPDRGCLVYEYMENGSLADRLQRRKGTPPIPWFDRFRIAWEIGSALVFLHSTKPSPIIHRDLKPENVLLDRNLVSKIGDVGLSTLMPPKETLSNRTVYKKTGLAGTLFYLDPEYQRTGQVSVKSDTYALGMVILELLTARCPIGLPEVVEQAVEEGQISNVLDESAGDWPVREAHDLAQLGLNCLEMRSKDRPDLNSVVLEELGRLKRIAASVSGVALPGSPSHFKCPILKTVMYDPCIASDGYTYERSAMEMWLCDKDVSPVTKARLRDKTLLPNLSLKSAIVRWVADGGRPVKE
Length693
PositionTail
OrganismTriticum urartu (Red wild einkorn) (Crithodium urartu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.06
Grand average of hydropathy-0.288
Instability index45.10
Isoelectric point5.81
Molecular weight75630.18
Publications
PubMed=23535596

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31254
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.41|      33|      61|     134|     191|       1
---------------------------------------------------------------------------
  134-  167 (59.86/59.89)	GNPPSKS..PFTrRSTASRTA..CKICKSLPSFC.TAYV
  194-  231 (44.55/18.94)	GNSGSSStkEFT.DGTSSRSDldGSSAPGLPSFTlNDYL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.10|      25|     106|     263|     329|       2
---------------------------------------------------------------------------
  239-  263 (41.56/77.72)	ANMDRRIASPTGAESSILSQFRGSD
  306-  330 (43.54/ 9.14)	ADRESRLEKPLVLPSDSYSMFTWEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     232.78|      76|     138|     341|     427|       3
---------------------------------------------------------------------------
  341-  427 (125.48/92.70)	KIG............TGSNGTVYK.....GHLNHLDVAI.KVLHSDDKSSTRHfnqelevLSKIrhphLLMLLGA.CP.DRGCLVYEYMENGSLADRLQRRKGTPPI
  473-  568 (107.30/60.13)	KIGdvglstlmppkeTLSNRTVYKktglaGTLFYLDPEYqRTGQVSVKSDTYA.......LGMV....ILELLTArCPiGLPEVVEQAVEEGQISNVLDESAGDWPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.32|      15|     431|     174|     192|       4
---------------------------------------------------------------------------
  174-  192 (24.82/19.97)	SSVHVPesesGSPSGSPVP
  611-  625 (31.50/16.02)	SGVALP....GSPSHFKCP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31254 with Med32 domain of Kingdom Viridiplantae
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