<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31252

Description Transcription elongation regulator 1
SequenceMATPEVVASDAANPQPDEPSRAEEAAPVAEPEEASDLGAVAAAPAVEEVAAGDAPPATTPTSTSTSSAAVLGASGVVSGARVLLQRSAQGAALAAYGQRFGPPAASFRSGVCYYVAIILKLCCYACCTVFDLHLALMARPMPPAALQPPAPRQYFGNRPSFSYNVVSHANASLPTVFNEPILFCNALTLNATFSFRGQTMLSKSLCLLHQHPCNLLLLGNCLAQGNLDVGASKSDAPSAPEVSPHTVQSLPPRPEGFGAVGGSAPGQRPSNLSTPPSLLQRPTGPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAPSYPSAPGNPPQPLWGYPPQPTGFQQAPFHSYPPGSLGPLGTPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSMAGVQDSDAWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPALQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKLKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKPGYQDFERKWGADPRFVALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLRECKDIIPTSRWTKVKENFRSDPRYKAVKHEERENAFNEYIAELKSAEREVEQAAKAKVDEQAKLRERERETRKRKEREEQEMERVKLKIRRKDATSSYQALLVETIKDPKASWTESKPKLEKDPQGRAVNPDLGQGEAEKLFREHVKDLYETWQHFGRDMYHLSLHAQIMRCRRDFRALLSEAIAPDAATRTTEGGKTVVISWSEAKDLLRSDPRYSKVASKDRESMWRRYADDMVRKLKQPDTEKPDTNARQQQQRQQQRRSSDPPRRSFFGFERIMFLKLMKYIELSSQNNAMLMCHFVSLEAKCWPALAKEPEPADFTCNHAPAP
Length1114
PositionUnknown
OrganismTriticum urartu (Red wild einkorn) (Crithodium urartu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.07
Grand average of hydropathy-0.682
Instability index50.26
Isoelectric point8.26
Molecular weight121928.41
Publications
PubMed=23535596

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31252
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.76|      25|      26|     311|     335|       1
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  237-  258 (23.49/ 6.49)	....PSAPevSPHTVQSLPPRP.EGFG
  311-  335 (55.77/26.69)	YPSYPSAP..SYPSAPGNPPQPLWGYP
  368-  384 (26.49/ 8.37)	TTSLPNI..........QPPGITTGDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     194.46|      51|      51|     423|     473|       2
---------------------------------------------------------------------------
  423-  470 (80.87/42.33)	........WSAHKTEAGVLYYYNALTGE.STYQRPPGYKG..ELEKVAAQPVPASWDKI
  471-  509 (51.44/24.20)	AGT....dWSIVTTSDGKKYYYDNKQKV.SSWQLPPEV.A..ELNKN............
  510-  568 (62.15/30.80)	ADSgnlkgSSTSLQDAGTVANKGEASGEiSTPALQTGGRDslPLRQTVAPASPSALDLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     568.33|     145|     191|     764|     911|       3
---------------------------------------------------------------------------
  634-  746 (154.46/81.02)	...DEEH..................................GPSKEDCIREFKKMLKE.RGVAPFSK.............WEKELPKIVFDSRFklKAIpSHSTRRAIFDHFV..............RTRADEE......RKEKRAAQ.....................KAAVEAYKQLLE.EASEgiDSKPGYQDFERKWGADPR
  764-  911 (232.26/131.15)	RALEEKV..................................QSARNAVITDFKSMLRECKDIIPTSR.............WTKVKENFRSDPRY..KAV.KHEERENAFNEYIAELKsaeREVEQAAKAKVDEQAK...LRERERETRKRKEREEQEMERVK.LKI.RRKDATSSYQALLV.ETIK..DPKASWTESKPKLEKDPQ
  913- 1102 (181.61/96.53)	RAVNPDLgqgeaeklfrehvkdlyetwqhfgrdmyhlslhaQIMRCR..RDFRALLSEA..IAPDAAtrtteggktvvisWSEAKDLLRSDPRY..SKV.ASKDRESMWRRYADDMV...RKLKQPDTEKPDTNARqqqQRQQQRRSSDPPRRSFFGFERIMfLKLmKYIELSSQNNAMLMcHFVS..LEAKCW....PALAKEPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.80|      17|      25|     263|     283|       4
---------------------------------------------------------------------------
  268-  290 (18.78/12.90)	RPSNlSTPPSLLQrPTgpapSLP
  344-  360 (33.02/ 9.53)	APFH.SYPPGSLG.PL....GTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.36|      23|     191|     210|     236|       7
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  178-  204 (30.71/13.10)	NEPilfCNALTLNATFSfRGQTMLSKS
  210-  232 (41.65/31.84)	QHP...CNLLLLGNCLA.QGNLDVGAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.77|      16|     231|      52|      73|       9
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   24-   39 (27.58/ 7.80)	EAAPVAEPEEASD.....LGA
   53-   73 (23.19/16.32)	DAPPATTPTSTSTssaavLGA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31252 with Med35 domain of Kingdom Viridiplantae
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