<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31252

Description Transcription elongation regulator 1
SequenceMATPEVVASDAANPQPDEPSRAEEAAPVAEPEEASDLGAVAAAPAVEEVAAGDAPPATTPTSTSTSSAAVLGASGVVSGARVLLQRSAQGAALAAYGQRFGPPAASFRSGVCYYVAIILKLCCYACCTVFDLHLALMARPMPPAALQPPAPRQYFGNRPSFSYNVVSHANASLPTVFNEPILFCNALTLNATFSFRGQTMLSKSLCLLHQHPCNLLLLGNCLAQGNLDVGASKSDAPSAPEVSPHTVQSLPPRPEGFGAVGGSAPGQRPSNLSTPPSLLQRPTGPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAPSYPSAPGNPPQPLWGYPPQPTGFQQAPFHSYPPGSLGPLGTPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSMAGVQDSDAWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPALQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKLKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKPGYQDFERKWGADPRFVALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLRECKDIIPTSRWTKVKENFRSDPRYKAVKHEERENAFNEYIAELKSAEREVEQAAKAKVDEQAKLRERERETRKRKEREEQEMERVKLKIRRKDATSSYQALLVETIKDPKASWTESKPKLEKDPQGRAVNPDLGQGEAEKLFREHVKDLYETWQHFGRDMYHLSLHAQIMRCRRDFRALLSEAIAPDAATRTTEGGKTVVISWSEAKDLLRSDPRYSKVASKDRESMWRRYADDMVRKLKQPDTEKPDTNARQQQQRQQQRRSSDPPRRSFFGFERIMFLKLMKYIELSSQNNAMLMCHFVSLEAKCWPALAKEPEPADFTCNHAPAP
Length1114
PositionUnknown
OrganismTriticum urartu (Red wild einkorn) (Crithodium urartu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.07
Grand average of hydropathy-0.682
Instability index50.26
Isoelectric point8.26
Molecular weight121928.41
Publications
PubMed=23535596

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31252
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.76|      25|      26|     311|     335|       1
---------------------------------------------------------------------------
  237-  258 (23.49/ 6.49)	....PSAPevSPHTVQSLPPRP.EGFG
  311-  335 (55.77/26.69)	YPSYPSAP..SYPSAPGNPPQPLWGYP
  368-  384 (26.49/ 8.37)	TTSLPNI..........QPPGITTGDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     194.46|      51|      51|     423|     473|       2
---------------------------------------------------------------------------
  423-  470 (80.87/42.33)	........WSAHKTEAGVLYYYNALTGE.STYQRPPGYKG..ELEKVAAQPVPASWDKI
  471-  509 (51.44/24.20)	AGT....dWSIVTTSDGKKYYYDNKQKV.SSWQLPPEV.A..ELNKN............
  510-  568 (62.15/30.80)	ADSgnlkgSSTSLQDAGTVANKGEASGEiSTPALQTGGRDslPLRQTVAPASPSALDLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     568.33|     145|     191|     764|     911|       3
---------------------------------------------------------------------------
  634-  746 (154.46/81.02)	...DEEH..................................GPSKEDCIREFKKMLKE.RGVAPFSK.............WEKELPKIVFDSRFklKAIpSHSTRRAIFDHFV..............RTRADEE......RKEKRAAQ.....................KAAVEAYKQLLE.EASEgiDSKPGYQDFERKWGADPR
  764-  911 (232.26/131.15)	RALEEKV..................................QSARNAVITDFKSMLRECKDIIPTSR.............WTKVKENFRSDPRY..KAV.KHEERENAFNEYIAELKsaeREVEQAAKAKVDEQAK...LRERERETRKRKEREEQEMERVK.LKI.RRKDATSSYQALLV.ETIK..DPKASWTESKPKLEKDPQ
  913- 1102 (181.61/96.53)	RAVNPDLgqgeaeklfrehvkdlyetwqhfgrdmyhlslhaQIMRCR..RDFRALLSEA..IAPDAAtrtteggktvvisWSEAKDLLRSDPRY..SKV.ASKDRESMWRRYADDMV...RKLKQPDTEKPDTNARqqqQRQQQRRSSDPPRRSFFGFERIMfLKLmKYIELSSQNNAMLMcHFVS..LEAKCW....PALAKEPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.80|      17|      25|     263|     283|       4
---------------------------------------------------------------------------
  268-  290 (18.78/12.90)	RPSNlSTPPSLLQrPTgpapSLP
  344-  360 (33.02/ 9.53)	APFH.SYPPGSLG.PL....GTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.36|      23|     191|     210|     236|       7
---------------------------------------------------------------------------
  178-  204 (30.71/13.10)	NEPilfCNALTLNATFSfRGQTMLSKS
  210-  232 (41.65/31.84)	QHP...CNLLLLGNCLA.QGNLDVGAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.77|      16|     231|      52|      73|       9
---------------------------------------------------------------------------
   24-   39 (27.58/ 7.80)	EAAPVAEPEEASD.....LGA
   53-   73 (23.19/16.32)	DAPPATTPTSTSTssaavLGA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31252 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREF
2) MATPEVVASDAANPQPDEPSRAEEAAPVAEPEEA
3) QLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPALQTGGRDSLPLRQTVAPASPSALDLIK
4) RKLKQPDTEKPDTNARQQQQRQQQRRSSDPP
5) SKSDAPSAPEVSPHTVQSLPPRPEGFGAVGGSAPGQRPSNLSTPPSLLQRPTGPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAPSYPSAPGNPPQPLWGYPPQPTGFQQAPFHSYPPGSLGPLGTPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSMAGVQDSDA
6) VEQAAKAKVDEQAKLRERERETRKRKEREEQEMERVKLKI
576
1
498
1023
232
836
648
34
569
1053
422
875










Molecular Recognition Features






MoRF SequenceStartStop




1) FFGFE
2) GKKYYYD
3) LIKKKL
4) RAEEAAPVAE
1057
483
567
21
1061
489
572
30