<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31247

Description ATP-dependent DNA helicase Q-like 4A
SequenceMPLNGAAPTASEVFDEMAGRRAEVISITQFEAFRDCPHMLAEPRKCYLHTSVWSWLLTLSAACKIQGPERLQVPWIEKAWRSVCNTQVTCKNYLRPGLSAKVKDCGRDFSPIYATDSSYNANKLDNVPKSTIPSQESLHRRTESGILEQNNSHRLASTCTTAYRSNYVVGTTYQSSFARTDAMSCQTVPVADNMCADDKLDAMDDDEILASIDVDRIVMEHYEATNTPRGLASRQMSTPSGNKCNFTGSDDNSLPQELSEICSHGYKLAFCPEPNYHLQGMKDQLIAVSNKLLDGSGELNPQHSEELRQQRAHLNKQIQILGDYMARPTQDDERQRSHSMASTTAAEGYHPPMTPSTFVDNNRSQSQFYDMNGPWDGGSCYTPAPCTYMDSNIPLTSVQRDYTRRNIDISYTDGSGDKKWSSTDFPWTKELEVHNKRVFGNRSFRPNQREIINATMNGSDVFVLMPTGGGKSLTYQCSHMYDTTGQVLPALIDEGITLVVCPLVSLIQDQIMHLSQANIPATYLSANLEWTEQQRILRDLMSPTSTCNYKLLYVTPEKIAKSDALLRQLEILYSRGYLCRIVIDEAHCVSQWGHDFRPDYQHLGLLKQKFPETPVLALTATATASVKEDVVQALGLANCVVFKQSFNRPNLRNLGTKQDTTMVAWSLLIEQLFRGYGVSINPMSVLLFIIPFPNQLKGTIRSVDVLVEMDNAHLVCCIITILTIRLLQLIHFGETFDPSHCSKTCDNCKKGLRWIEKDVTNIAKQLVELVLATRQSCSSSHILEVYRGSLNQNVKKNRHDNLPLHGAGKNLAKGEAARVLRHLVTEGILTEDVKKSDMYGSVSSVLKANQVKVGGLRSGNQIVLKFPTADKAPKMGKLDESSISQVNKTVQRQSEMDENFSSLLYETLRILRSQIAEGTAGCGVHHIFKNETLKEISTRIPRTKEELLEINGIGKVKLNKYGDRVLATIEEFLNQFPNGSKRSSSSGGSNEQNEAVKKRRGFTAIDTSGNGNDFEERTVQSKKHTGKTRNGKQGIPDAASVIQDVRYIDVDLDGCEEVDELCSSVQQPVASGRVLPKWTAGGNAPTPNIFEEFKYTN
Length1097
PositionUnknown
OrganismTriticum urartu (Red wild einkorn) (Crithodium urartu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.07
Grand average of hydropathy-0.445
Instability index48.26
Isoelectric point6.73
Molecular weight122333.10
Publications
PubMed=23535596

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:InterPro
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31247
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.90|      41|     151|     777|     820|       1
---------------------------------------------------------------------------
  777-  820 (62.60/54.33)	CSSSHIL..EVYRgSLNQNVKKNRHDNLPLHGAGK.NLAK.GEaaRVL
  922-  966 (57.31/38.47)	CGVHHIFknETLK.EISTRIPRTKEELLEINGIGKvKLNKyGD..RVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.43|      35|     379|     266|     301|       6
---------------------------------------------------------------------------
  266-  301 (59.58/43.46)	YKLAFcPEPNYHLQGMKDQ..LIAVS...NKLLDGSG.ELNP
  642-  682 (51.84/31.89)	FKQSF.NRPNLRNLGTKQDttMVAWSlliEQLFRGYGvSINP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.60|      17|     213|     312|     329|       7
---------------------------------------------------------------------------
  312-  329 (27.87/20.17)	AHL..NKQIQILGDYMArPT
  526-  544 (24.73/12.81)	ANLewTEQQRILRDLMS.PT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31247 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PNGSKRSSSSGGSNEQNEAVKKRRGFTAIDTSGNGNDFEERTVQSKKHTGKTRNGKQGIP
2) SNKLLDGSGELNPQHSEELRQQRAHLNKQIQILGDYMARPTQDDERQRSHSMASTTAAEGYHPPMTPSTFVDNNRSQSQFY
977
289
1036
369










Molecular Recognition Features






MoRF SequenceStartStop




1) NIFEEFKYTN
1088
1097