<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31245

Description U-box domain-containing protein 52
SequenceMARGSTLQLVHVRINQSTQTGLALYGEAGRGVDTDAEMSQLFISYRGYCARKGMHLNEVILDGNDISKAIIDYATGHAITDIVVGASTRNTFIRRFRNPDVPTCLMKMAPDYCTVHVIHKGKAIQVKAAKAPAPFTTLPPKQNSQPNIEPDAFPRSSREWRKFSNPSSPRTSRTSVDRLSGYAKVPTKDRHLLSGRQAPQKDFDDYIDFIAPPRPSVTRSSFSDDVDFPMSMELNSLDYGESLELSSYASLESLSSAGKDVEAEMRRLRLELKQTMEMYNSACKEAIDAKQKAAQLSQMKVEESKLYQELRSSEEEALALVEMEKAKCKAALEAAEAAQKIAELEAQKRLRAEWKAKREFEERRRASDTDPRYRRYSIDDIEAATHKFDRALKIGEGGYGPVYKAVLDHTNVAIKILRPDASQGRKQFQQEIEILSSMRHPNMVLLLGACPEYGCLVYEYMDYGSLEDRLCRRGNTKPIPWNIRFRIAADIATGLLFLHQAKPEPLVHRDLKPGNILLDHNFVSKISDVGLARLVPQSIAEVTQYRMTSTAGTFCYIDPEYQQTGMLTTKSDIYSFGILLLQIITARSPMGLTHQVEHAIEKGAFQEVLDPTVTDWPVEEALAFARLALKCAELRKKDRPDLGKEILPELNRLRTLGQEYEAAQVSNTSYSSATSYSFNNDDVSSP
Length686
PositionTail
OrganismTriticum urartu (Red wild einkorn) (Crithodium urartu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.07
Grand average of hydropathy-0.471
Instability index48.19
Isoelectric point6.94
Molecular weight77031.67
Publications
PubMed=23535596

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31245
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     180.08|      59|     301|     315|     381|       1
---------------------------------------------------------------------------
  241-  299 (94.53/55.81)	ESLEL......SSYASLESLSSAGKDVEAE.MRRLRLELKQTMEMYNSACKEAIDAKQKAAQLSQM
  316-  381 (85.55/68.61)	EALALvemekaKCKAALEAAEAAQKIAELEaQKRLRAEWKAKREFEERRRASDTDPRYRRYSIDDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     175.69|      66|     379|      55|     122|       2
---------------------------------------------------------------------------
   55-   86 (28.28/22.60)	...................................................................................................................................................................................................................................................................................................................................................................HLNEVILDGNDISKAIIDYatGHAITDIVVGA
   87-  122 (51.60/34.93)	STRNTFIRRFRNPDVPTCL.MKMAPDYCT.VHVIHKGK.............................................................................................................................................................................................................................................................................................................................................................
  440-  464 (30.27/17.51)	......................................aiqvkaakapapfttlppkqnsqpniepdafprssrewrkfsnpssprtsrtsvdrlsgyakvptkdrhllsgrqapqkdfddyidfiapprpsvtrssfsddvdfpmsmelnsldygeslelssyasleslssagkdveaemrrlrlelkqtmemynsackeaidakqkaaqlsqmkveesklyqelrsseeealalvemekakckaaleaaeaaqkiaeleaqkrlraewkakrefeerrrasdtdpryrrysiddieaathkfdralkigeggygpvykavldhtnvaikilrpdasqgrkqfqqeieilssmrHPNMVLLLG.....ACPEY..GCLVYEYMDYG
  465-  528 (65.54/46.75)	SLEDRLCRRGNTKPIPWNIrFRIAADIATgLLFLHQAK....................................................................................................................................................................................................................................................................................................................peplvhrdlKPGNILLDHNFVSK.ISD..............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     140.57|      45|     454|     177|     229|       4
---------------------------------------------------------------------------
  177-  229 (75.17/71.88)	DRLS.GYAKVPTKDRHLLSGR..QAPQKDFDDYidfiapprPSVTRSSF.SDDVDFP
  638-  686 (65.40/44.97)	DRPDlGKEILPELNRLRTLGQeyEAAQVSNTSY........SSATSYSFnNDDVSSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31245 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) APAPFTTLPPKQNSQPNIEPDAFPRSSREWRKFSNPSSPRTSRTSVDRLSG
131
181










Molecular Recognition Features






MoRF SequenceStartStop




1) KDFDDYIDFIAPP
201
213