<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31238

Description Uncharacterized protein
SequenceMSRGLLWHHLRHLQRGPGVRMPNCVQKYPPRRVRTDKKVRGSKVRRPDTHLRRRIRLAVRRLAELPVLPKVGLGDVIHATRDLLRGQPRRPHAVGVLKADHFADEAGAPLKRKDPAPDERGEEVGAAPVRLRPRRCDSEGRKVDVIRTEVVDVEGVLPLLGRILQRDLGEIRPRPLRDDGGAAIGELLGRQALLLQGEEARPEVDRRLDPQISLLERSELQHRIKAFCSSRSPEHWLKNQPPKRAELQKALGNHLSWKDRYPPFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAFYSTFLAFHPLRFTFVRDILAYFYGHLPSKLIVRILNVLGVTTKTPFSESFAQYLGSSNSSICPPPEYFANLLLGLVNNVIPPLSSKSKSNPADASGGRTNFSKPHASTQAGGNSNADAQRAFYQNQDPGSYTQLVLETAAIEILSLSVPASQIVSSLVQLIAHVQAMLIQSNTGQGMSGGLGQNSGLPTSPSGAGAESAGASRANISASGISANFVSRSGYSCQQLSVLMIQACGFLLAQLPPEFHMQLYSEAARIIKDCRWLSDSSRPVKELNSAVGYALLDPTWASQDSTSTAIGTLYVCSALIAGNIVALLHSFFSNLPQEWLGSSHTVIKHLKPVTSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFSVLGDVFGKNSQASPHVPASEIGDIIDFLHHAVMYEGQGGPVQSTSKPKVEILTLCGKVVDMLRPDVQHLLSHLKTEPTSSIYAATHPKLAQQHPS
Length768
PositionTail
OrganismTriticum urartu (Red wild einkorn) (Crithodium urartu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.06
Grand average of hydropathy-0.151
Instability index50.32
Isoelectric point9.69
Molecular weight84216.97
Publications
PubMed=23535596

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31238
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     111.87|      22|      23|      69|      90|       1
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   42-   61 (26.59/11.93)	SKVR..RPDT.HLRRR.IRLAVR..R
   69-   90 (39.70/21.46)	PKVG..LGDVIHATRDLLRGQPR..R
  158-  177 (22.65/ 9.08)	PL....LGRILQ..RDLGEIRPRplR
  178-  201 (22.93/ 9.28)	DDGGaaIGELLGRQALLLQGEEA..R
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.74|      20|      23|     546|     568|       2
---------------------------------------------------------------------------
  546-  565 (34.56/29.60)	QLYSEAARIIKDCRWLSDSS
  570-  589 (32.18/16.75)	ELNSAVGYALLDPTWASQDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.68|      14|      21|     379|     392|       3
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  379-  392 (25.45/18.26)	PPLSSKSKSNP.ADA
  402-  416 (21.23/13.78)	PHASTQAGGNSnADA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.29|      14|      18|     104|     121|       4
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  108-  121 (24.80/21.71)	APLKRKDPAPDERG
  127-  140 (25.49/10.21)	APVRLRPRRCDSEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.03|      17|      24|     219|     241|       6
---------------------------------------------------------------------------
  219-  241 (21.87/28.99)	ELQhriKAFCSSRSpehWLKNQP
  246-  262 (32.17/18.44)	ELQ...KALGNHLS...WKDRYP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.22|      20|      23|     643|     662|       7
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  643-  662 (34.78/20.31)	LRIAFRILGPLLPRLAFARP
  668-  687 (33.44/19.25)	LALLFSVLGDVFGKNSQASP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.00|      18|      23|     476|     493|       8
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  476-  493 (33.09/19.36)	SGGLGQ....NSGLPTS.PSGAG
  496-  518 (17.92/ 7.07)	SAGASRanisASGISANfVSRSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.09|      16|      28|     428|     443|       9
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  428-  443 (25.05/17.32)	SYTQLVLETAAIEILS
  454-  469 (26.04/18.28)	SLVQLIAHVQAMLIQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.32|      14|      16|     343|     356|      10
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  343-  356 (26.46/18.16)	PFSESFAQ.YLGSSN
  361-  375 (22.86/14.59)	PPPEYFANlLLGLVN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31238 with Med23 domain of Kingdom Viridiplantae
Unable to open file!