<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31238

Description Uncharacterized protein
SequenceMSRGLLWHHLRHLQRGPGVRMPNCVQKYPPRRVRTDKKVRGSKVRRPDTHLRRRIRLAVRRLAELPVLPKVGLGDVIHATRDLLRGQPRRPHAVGVLKADHFADEAGAPLKRKDPAPDERGEEVGAAPVRLRPRRCDSEGRKVDVIRTEVVDVEGVLPLLGRILQRDLGEIRPRPLRDDGGAAIGELLGRQALLLQGEEARPEVDRRLDPQISLLERSELQHRIKAFCSSRSPEHWLKNQPPKRAELQKALGNHLSWKDRYPPFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAFYSTFLAFHPLRFTFVRDILAYFYGHLPSKLIVRILNVLGVTTKTPFSESFAQYLGSSNSSICPPPEYFANLLLGLVNNVIPPLSSKSKSNPADASGGRTNFSKPHASTQAGGNSNADAQRAFYQNQDPGSYTQLVLETAAIEILSLSVPASQIVSSLVQLIAHVQAMLIQSNTGQGMSGGLGQNSGLPTSPSGAGAESAGASRANISASGISANFVSRSGYSCQQLSVLMIQACGFLLAQLPPEFHMQLYSEAARIIKDCRWLSDSSRPVKELNSAVGYALLDPTWASQDSTSTAIGTLYVCSALIAGNIVALLHSFFSNLPQEWLGSSHTVIKHLKPVTSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFSVLGDVFGKNSQASPHVPASEIGDIIDFLHHAVMYEGQGGPVQSTSKPKVEILTLCGKVVDMLRPDVQHLLSHLKTEPTSSIYAATHPKLAQQHPS
Length768
PositionTail
OrganismTriticum urartu (Red wild einkorn) (Crithodium urartu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.06
Grand average of hydropathy-0.151
Instability index50.32
Isoelectric point9.69
Molecular weight84216.97
Publications
PubMed=23535596

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31238
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     111.87|      22|      23|      69|      90|       1
---------------------------------------------------------------------------
   42-   61 (26.59/11.93)	SKVR..RPDT.HLRRR.IRLAVR..R
   69-   90 (39.70/21.46)	PKVG..LGDVIHATRDLLRGQPR..R
  158-  177 (22.65/ 9.08)	PL....LGRILQ..RDLGEIRPRplR
  178-  201 (22.93/ 9.28)	DDGGaaIGELLGRQALLLQGEEA..R
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.74|      20|      23|     546|     568|       2
---------------------------------------------------------------------------
  546-  565 (34.56/29.60)	QLYSEAARIIKDCRWLSDSS
  570-  589 (32.18/16.75)	ELNSAVGYALLDPTWASQDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.68|      14|      21|     379|     392|       3
---------------------------------------------------------------------------
  379-  392 (25.45/18.26)	PPLSSKSKSNP.ADA
  402-  416 (21.23/13.78)	PHASTQAGGNSnADA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.29|      14|      18|     104|     121|       4
---------------------------------------------------------------------------
  108-  121 (24.80/21.71)	APLKRKDPAPDERG
  127-  140 (25.49/10.21)	APVRLRPRRCDSEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.03|      17|      24|     219|     241|       6
---------------------------------------------------------------------------
  219-  241 (21.87/28.99)	ELQhriKAFCSSRSpehWLKNQP
  246-  262 (32.17/18.44)	ELQ...KALGNHLS...WKDRYP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.22|      20|      23|     643|     662|       7
---------------------------------------------------------------------------
  643-  662 (34.78/20.31)	LRIAFRILGPLLPRLAFARP
  668-  687 (33.44/19.25)	LALLFSVLGDVFGKNSQASP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.00|      18|      23|     476|     493|       8
---------------------------------------------------------------------------
  476-  493 (33.09/19.36)	SGGLGQ....NSGLPTS.PSGAG
  496-  518 (17.92/ 7.07)	SAGASRanisASGISANfVSRSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.09|      16|      28|     428|     443|       9
---------------------------------------------------------------------------
  428-  443 (25.05/17.32)	SYTQLVLETAAIEILS
  454-  469 (26.04/18.28)	SLVQLIAHVQAMLIQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.32|      14|      16|     343|     356|      10
---------------------------------------------------------------------------
  343-  356 (26.46/18.16)	PFSESFAQ.YLGSSN
  361-  375 (22.86/14.59)	PPPEYFANlLLGLVN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31238 with Med23 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DEAGAPLKRKDPAPDERGEEVGAAPVRLRP
2) GVRMPNCVQKYPPRRVRTDKKVRGSKVRRPDTH
3) SKSNPADASGGRTNFSKPHASTQAGGNSNADAQRAFY
104
18
385
133
50
421










Molecular Recognition Features






MoRF SequenceStartStop




1) NCVQKYPP
2) RGLLW
23
3
30
7