<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31236

Description Uncharacterized protein
SequenceMALETLRKILPVSVPDELIKLQEIARQFEDKIYTEATNQSDYVRKISLKMVSMETSRQLAPGNAQVIPNQNNSAPALPPQGRNQAQTSAIPLMSEQQSQQNQLNPVQQSVQSLLQQPQQTVGRQQRQAHPSIHQQPSLQSQQLNILLQQQQQQQQLMGHQPNLQQNGAVEMQEQQRLPVQSNNLLNVQQTQQMLNQQYMPLHQPHQLGSQAYMVSLQHQQLLGTVPNVSNMHRMHMLHTEAQQPQEQQHAQQPPMQPQSQHNQLQQSQQHLMSQFQSQPNQLQHQSGMQPQSSMQRRLQASGGMLLQQNNMDPIQSQRGLQEVSSSTSADSTAQTGDEDEDADYWQEEIYQMVKIMKDQYFADLSELFNKICVKLQHVESMIPPPIPSEQYDRMKSFKTMLERILQMLQISKSIIQPAMRDRVPQYEKQIITILNCLRKPVQPQVQQ
Length447
PositionTail
OrganismTriticum urartu (Red wild einkorn) (Crithodium urartu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.03
Grand average of hydropathy-0.860
Instability index83.53
Isoelectric point6.53
Molecular weight51412.54
Publications
PubMed=23535596

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31236
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     244.52|      40|      40|      77|     116|       1
---------------------------------------------------------------------------
   77-  116 (72.83/24.68)	LPPQ..GRNQAQTSAIPLMSEQQS...QQNQLNPV...QQSVQSL......LQQ
  117-  157 (33.71/ 6.75)	.PQQtvGRQQRQ..AHPSIHQQPS..lQSQQLNILlqqQQQQQQL......M..
  158-  203 (38.60/ 8.99)	..GH..QPNLQQNGAVE.MQEQQRlpvQSNNLLNV...QQTQQMLnqqympLHQ
  244-  277 (50.41/14.41)	..PQ..EQQHAQ..Q.PPM.QPQS...QHNQLQQS...QQHLMSQ......FQS
  288-  322 (48.96/13.74)	MQPQ..SSMQRRLQASGGM...LL...QQNNMDPI...QS..QRG......LQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.65|      26|      28|     392|     417|       2
---------------------------------------------------------------------------
  361-  384 (31.77/16.12)	..FADLSELFNKICVKLQHVESMIPP
  392-  417 (42.95/23.99)	DRMKSFKTMLERILQMLQISKSIIQP
  421-  443 (35.92/19.04)	DRVPQYE...KQIITILNCLRKPVQP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31236 with Med15 domain of Kingdom Viridiplantae
Unable to open file!