<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31234

Description Uncharacterized protein
SequenceMAYVYSVPSESAETTCDRTKGFRKKYLFTRYFLNTLYDTFSKTAHGLPPQGSNQAQTSVIPLMSQQQARQPNSSTSVQASSLANIGQNLPGVNQTSTMQNASVMPQNTMNNGLVQGTSQDIYAAQRQMAGRQQQQQSQQLIYHQQQMLMKQKLQQNSLMQPHIQQQQSLLQPTQTQSSQQSMMQMSSGLHPGQSTVPQTQPMAMQSATQSGIQQNQLNSVQQSVQSLLQQPQQSVGRQQQQAQPSMHQQPSLQSPQPNIPLQQQHQQLMGQQPNAQQNQLIGQQNGAMEMQQQQRLPVQSNNLLNVQQTQQMLNQTSTPLHQPQQLGSQSNMSSLQQQQQNQQPQQLLGTVPNVSNMQRMHMLQTKVQQPQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQSSMQQRLQTSGGMLLQKNNMDQQKQFIQAHRGLQEVSSSTSADSTAQTGHAGAGRIIQQPASEYVQVLHIKSLKDQYFAELSELFNKISVKLQHVDSIIPPQKPSEQYDRMKSFKIMLERILQMLQISKSTIQPAMRDKVPQYEKQIISILNSQRRKPVQPQIQQHFQPPAGQAPNSSISQQQQPSQTLQQHDSHTNPQASLSSMSTGLQSSSAAGIQHVPAPPTKNFSAPTQQNGANIQHQADSNLETAQGGNFNSLQHGSVSSALQQGSTVPMQGTMNTQLQTSSSMLSHNSMSTMQPNGNSMQANASSFLQLKQQQQDHQMMQSQQMKRQMFQQYQQKQQMLQQQLPVQQHLQKQQPVQMQIPQLHAGNDVNELKVRQGTAMKPGMYQQHLGQRSNYYHQQLKQSGAFPISSPQNNLQASSPQISHHSPQVDQHNPLPSQVKTGTPLHSVNSPFVPSPSPSIAPSPITVDSDKPHSNISSLTNTGQAGHQQTSLVPQTQSIAVNTPGISASPLLAEFTSVDGSQANMPTQAPTKSSAVERPLVRLLKALRTTQRESLNAAVSDIRSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITNDGSGASKKMKRDTSAMPLNVSSAGSFNDSFKQTFSVDTPDLQSTATSQAKWQKIEVNHALLEEIQEINQQLIDTELHVCEDDAESFAGTCEGAEGTVIKCTFTAVAVSPSLKSIFASAQMSPIMPLRLLVPASYPKCSPVLLDKFPDEQRNSEDLSMKAKSKFSILLRGLAEPMSLREIARTWDACARKTIAEYAQKTGGGSFSSSYGCWESCVGA
Length1245
PositionTail
OrganismTriticum urartu (Red wild einkorn) (Crithodium urartu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.04
Grand average of hydropathy-0.735
Instability index71.67
Isoelectric point9.41
Molecular weight137423.57
Publications
PubMed=23535596

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31234
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     248.13|      38|      38|     191|     228|       2
---------------------------------------------------------------------------
   49-   89 (39.36/ 6.72)	PQGSNQAQTSVIP.LMSQQQAR..........QPNSSTS......VQAS..SLanigqnL
  191-  228 (71.65/19.39)	PGQSTVPQTQPMA.MQSATQSG.........IQQNQLNS......VQQSVQSL......L
  231-  269 (47.13/ 9.77)	PQQS.VGRQQ.....QQAQPSM.........HQQPSLQSpqpnipLQQQHQQL......M
  370-  401 (52.42/11.84)	PQQQQHAQQPPMGlMQP..QS...........QHNQL.........QQSQQHL......M
  688-  732 (37.56/ 6.01)	QG.STVPMQGTMN.TQLQTSSSmlshnsmstMQPNG.NS......MQANASSF......L
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.36|      15|      18|     755|     769|       3
---------------------------------------------------------------------------
  755-  769 (31.11/ 8.24)	QQYQQKQQMLQQQLP
  771-  785 (27.26/ 6.15)	QQHLQKQQPVQMQIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     211.63|      47|      64|     577|     623|       4
---------------------------------------------------------------------------
  132-  177 (60.18/17.18)	QQQQQSQQLiyH...QQQMLMKQKLQQNS...LMQPH....IQ.....QQ.QS...................................LLQPTQTQS
  418-  459 (53.28/14.11)	QQSSMQQRL..Q........TSGGMLLQK...NNMDQ....QK.....QFIQAH.................................RGLQEVSSST
  600-  650 (58.35/16.36)	QQQQPSQTL..Q...QHDSHTNPQASLSSmstGLQSSsaagI......QHV..P.................................APPTKNFSAP
  831-  918 (39.81/ 8.13)	PISSPQNNL..QassPQISHHSPQVDQHN...PLPSQ....VKtgtplHSVNSPfvpspspsiapspitvdsdkphsnissltntgqAGHQQTSLVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.92|      32|     183|      86|     119|       5
---------------------------------------------------------------------------
   86-  119 (48.02/25.54)	GQNlPGVNQTS.........TMQNASVMPQNTmNNGL.VQGTSQ
  270-  311 (48.90/21.83)	GQQ.PNAQQNQligqqngamEMQQQQRLPVQS.NNLLnVQQTQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.68|      19|     107|    1034|    1055|       6
---------------------------------------------------------------------------
 1034- 1055 (27.87/23.34)	ASKKMkrdTSAMPLNVSSAGSF
 1145- 1163 (33.81/19.56)	ASAQM...SPIMPLRLLVPASY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.55|      14|      17|     654|     667|       7
---------------------------------------------------------------------------
  654-  667 (24.57/14.70)	NGANIQHQA.DSNLE
  673-  687 (19.98/10.23)	NFNSLQHGSvSSALQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.92|      14|      39|     475|     493|       8
---------------------------------------------------------------------------
  477-  493 (18.92/11.83)	QQPASEYVQvlhIKSLK
  521-  534 (22.00/13.15)	QKPSEQYDR...MKSFK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.82|      11|     322|     407|     417|       9
---------------------------------------------------------------------------
  407-  417 (20.71/ 8.24)	QPNQLQQQLGM
  805-  815 (20.11/ 7.74)	KPGMYQQHLGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.87|      19|      24|     951|     969|      11
---------------------------------------------------------------------------
  950-  968 (31.86/18.23)	P..TQAPTKSS..AVERPLVRLL
  995- 1017 (19.01/ 7.73)	RiaGSAPGNGSraAVGEDLVAMT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.09|      10|     139|     921|     930|      14
---------------------------------------------------------------------------
  921-  930 (18.32/12.14)	QSIAVNTPGI
 1061- 1070 (17.77/11.51)	QTFSVDTPDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.97|      17|      25|     542|     558|      15
---------------------------------------------------------------------------
  542-  558 (28.65/13.47)	QMLQISKS....TIQPAMRDK
  565-  585 (21.32/ 7.93)	QIISILNSqrrkPVQPQIQQH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31234 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KQKLQQNSLMQPHIQQQQSLLQPTQTQSSQQSMMQMSSGLHPGQSTVPQTQPMAMQSATQSGIQQNQ
2) PLLAEFTSVDGSQANMPTQAPTKSSAVERPLVRL
3) PVQPQIQQHFQPPAGQAPNSSISQQQQPSQTLQQHDSHTNPQASLSSMSTGLQSSSAAGIQHVPAPPTKNFSAPTQQNGANIQHQADSNLETAQGGNFNSLQHGSVSSALQQGSTVPMQGTMNTQLQTSSSMLSHNSMSTMQPNGNSMQANASSFLQLKQQQQDHQMMQSQQMKRQMFQQYQQKQQMLQQQLPVQQHLQKQQPVQMQIPQLHAGNDVNELKVRQGTAMKPGMYQQHLGQRSNYYHQQLKQSGAFPISSPQNNLQASSPQISHHSPQVDQHNPLPSQVKTGTPLHSVNSPFVPSPSPSIAPSPITVDSDKPHSNISSLTNTGQAGHQQTSLVPQTQSIA
4) TAHGLPPQGSNQAQTSVIPLMSQQQARQPNSSTSVQASSLANIGQNLPGVNQTSTMQNASVMPQNTMNNGLVQGTSQDIYAAQRQMAG
5) VQQSVQSLLQQPQQSVGRQQQQAQPSMHQQPSLQSPQPNIPLQQQHQQLMGQQPNAQQNQLIGQQNGAMEMQQQQRLPVQSNNLLNVQQTQQMLNQTSTPLHQPQQLGSQSNMSSLQQQQQNQQPQQLLGTVPNVSNMQRMHMLQTKVQQPQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQSSMQQRLQTSGGMLLQKNNMDQQKQFIQAHRGLQEVSSSTSADSTAQTGHAGAGR
150
934
577
43
220
216
967
924
130
474










Molecular Recognition Features






MoRF SequenceStartStop




NANANA