<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31232

Description Uncharacterized protein
SequenceMDSHDQVYEQSQGTLKIPEAILHGSDLMVMGFPQCANAYYLLMQLDKDFRPVFHLLETQSDASNKLNANIGAKEAMRVNKIDVGQMEKIKYEKNSNPFDAKLHSLQSIENCDDMMDNQLLIQNSVDPLPLLPACSPSFSSIVDETFECEHGSSLPSASPVRSLSLGPQGASTRTISQMQDGALSHAQANNTSIVRPGVGVNSYFQNSLSHLQSTNAFLSSNPVRNSSAIKLSNSKSNHDLSSLSSPSEHGIADGNKPFQLAPSSTLPAHLVRSSPAIEGLGKAITLGADCAPRKRSLSDFLLDLPSLQGLKSSEPSKRRKISESAQSSLPLQAYSSSSQSGTSLTHGNNILAERNNCVPATVYASVLLHVIRHCSLCIKHAQLTAQMYSSAIPYVEEVGMRSPSSNIWFRLPFAQDDSWKHICLRLGKAGSMSWDVRINDPHFKELWELNGGSTSTPWGVGVRIANTSEMDSHISFDVDGVVLTYSTVEADSVKRLVSDLQRLANARVFARGMRRLIGVKLDDKLDDNHISVGMKSQSVNKGHSDADRLSEHMGKPFRIEAVGLMSFWFSYGHMPMVHFVVEWETAKEGCTMHVSPDQLWPHTKFLEDFVNGGEVASFLDCIRLTAGPLLALGGAIRPARMPVTVSTGYSSMPKQTNNVPSQGPLANGSSATTMHHASAPSNATAHLGGHTLHTAAMLSAAGRGGPGLVPSSLLPFDVSVVLRGPYWIRIIYRKKFSVDMRCFAGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQGLNALEPAFMNATQPGPHLNTSAGAPQSAPVANRLNATPGVAMSRPTSSVANHVAASLSRAGNAMLSSSGLASGIGGASVRLTPGTGLPVHMKGELNTAFIGLGDDGGYGGGWVPLAALKKVLRGILKYLGVLWLFAQLPELLKEILGSILKDNEGALLNLDQEQPALRFYVGGYVFAVSVHRVQLLLQVLSVKRFHHQQQQQQAQSNAQEELTSAEINEICDYFSRRVASEPYDASRVASFITLLTLPISVLREFLKLITWKKGFSQAHGDIATAQRARIELCLENHSGSASDDRTESSLAKSNIHHDRAHSSVEFALTFVLDHALIPHMNVAGGAAWLPYCVSVRLRYSFGDNSHISFLAINGSHGGRACWLQSEDWERCKQKVARAVETVNGTPAVAEPGQGRLRMVAEMIQKQLQLCLQQLRDGPLSAGSTAS
Length1218
PositionTail
OrganismTriticum urartu (Red wild einkorn) (Crithodium urartu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.06
Grand average of hydropathy-0.176
Instability index50.94
Isoelectric point7.85
Molecular weight131726.14
Publications
PubMed=23535596

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31232
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     423.60|     124|     148|     598|     745|       1
---------------------------------------------------------------------------
  209-  267 (48.67/15.71)	....................................................................SHLQSTNAFLSSNPVRN.SSA...IKLS...NSKSN......HDLSSLSspsehgiADGNKPFQLAPSSTLP..........................
  598-  741 (197.33/147.33)	QLW..PHTKflEdfvNGG.EVASFLDCIRLTagPLL....ALG.GAIRPARMPVT.......VSTGysSMPKQTNNVPSQGPLANGSSATTMHHASAPSNATAHlgghtlHTAAMLS.......AAGRGGPGLVPSSLLPFDVsvvlrGPYWIRIIYRKKFSVDMR
  747-  874 (177.60/88.95)	QVWlqPATP..P...KGGpSVGGSLPCPQFR..PFImehvAQGlNALEPAFMNATqpgphlnTSAG..........APQSAPVANRLNATPGVAMSRPTSSVAN......HVAASLS..........RAGNAMLSSSGLASGI.....GGASVRLTPGTGLPVHMK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.03|      23|      23|     416|     438|       2
---------------------------------------------------------------------------
  416-  438 (44.58/27.27)	DDSWKHICLRLGKAGSMSW..DVRI
  440-  464 (40.45/24.03)	DPHFKELWELNGGSTSTPWgvGVRI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.81|      15|      23|     894|     909|       3
---------------------------------------------------------------------------
  894-  909 (22.99/18.83)	W....VPlAALKKVLRGILK
  915-  933 (21.82/12.41)	WlfaqLP.ELLKEILGSILK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.35|      12|      28|     532|     543|       4
---------------------------------------------------------------------------
  532-  543 (22.16/11.70)	VGMKSQSVNKGH
  562-  573 (25.19/14.24)	VGLMSFWFSYGH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.24|      21|      22|     292|     313|       5
---------------------------------------------------------------------------
  292-  313 (32.42/22.86)	P.RKRSLSDFLL.DLPsLQGLKSS
  315-  337 (27.82/14.49)	PsKRRKISESAQsSLP.LQAYSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.23|      11|      28|     360|     370|       7
---------------------------------------------------------------------------
  360-  370 (18.00/10.56)	ATVYASVLLHV
  385-  395 (20.22/12.76)	AQMYSSAIPYV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.44|      10|     663|     471|     480|       8
---------------------------------------------------------------------------
  471-  480 (20.08/13.14)	DSHISF.DVDG
 1136- 1146 (15.36/ 8.23)	NSHISFlAING
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.70|      15|      23|     483|     497|      10
---------------------------------------------------------------------------
  483-  497 (23.70/16.16)	LTYSTVEADSVKRLV
  503-  517 (25.00/17.47)	LANARVFARGMRRLI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31232 with Med14 domain of Kingdom Viridiplantae
Unable to open file!