<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31220

Description Uncharacterized protein
SequenceMQNVSVMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQQQQSQQLIYQQQQMLMKQKLQQNSLMQPHIQQQQSLLQPTQMQSTQQSMMQMSSGLHPVQSTVPQTQPMSRQSVTQSGIQQNQLNSVQQSVPSLLQQPQQSVGRQQQQAQPSMHQQPSLQRQQPNIPLQQQQQQQQQLMGQQPNLERNQLIGQQNGAVEMQQQQRLPAQSNNLLNMQQTQQQMLNQQSMPLHQPQQLGSQANMSSLQQQQQNQQQQRMHMLQMKAQQTQQQQHAQQSPMGLMQPQSQNNQLQQSQQHLMSQFQSQPNQLQQQLGMQQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQAQRGLQEVSSSTSADSTTQTGLAGAGDWQEEIYQMIKSLKDQYFAELSDLSNKISMKLQHVDSIMPPQKPSEQYDRMKNFKNMLDRILQLLQISKSTIQPAMRDKVPQYEKQIISILSSQRRKPVQPQIQQQFQPPAGQAPNSSILQQQQTSQNLQQHDSHTNPQASLSSMSTGLQSSGVAGMQHVPVPPTTNFSAPTQQNGANIQHQAVSNMEAAQGGNLNSLQHGSVSGALQQGNTGLMQGTMNTQPQTSSGMLSHNSMSTMQPNGNSMQANASSLQQLKQQQQDHHMMQSQQMKRQMFQQYQQKQQMLQQQFPIQQQSQKQQQVQMQVPQLHAGNDVNESKARQGTAVKPGIYQQHLGQRSNYYHPQLKQGGAFPISSPQNLQQSSPQISHHSPQVDQHNLLPSQVKTGTPLNSANSPYVPSPSPSVAPSPIPVDSDKQHSNISSLTNTGQTGHQQTSLAPQTQSIAVNTPGISASPLLAEFTSVDGNQANMPTQVPTKSNAAERPMDRLLKALRTTQRESLNAAVSDIRSVVSMMDRIAGSAPGNGSRTAVGEDLVAMTKCRLQARNFIANDGSGASKKMKRDISAMPLNVSSAGSVDDSFKQTFSVDTPDLQSTATSRAKRRKIEVNHALLEEIEEINQGLIDTTLRVCEDDDESPAATSEGTVIKCTYTAVAVSPSLKSMLASAQTSPIMPLRLLVPAGYPKCSPVLLDKFLDEQRNSDDLSSKAKSKFGVLLRGLEEPMSLREIARTWDACARGAIAEYAQKSGGGSFSSSYGRWETCVV
Length1129
PositionTail
OrganismTriticum urartu (Red wild einkorn) (Crithodium urartu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.03
Grand average of hydropathy-0.836
Instability index76.57
Isoelectric point9.37
Molecular weight125050.58
Publications
PubMed=23535596

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31220
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     561.38|      75|      75|     695|     769|       2
---------------------------------------------------------------------------
   82-  147 (61.48/ 9.03)	............QQSMMQ.....MSSGLHPvQS..TV...PQTQPM.SRQSV.....TQSG..IQ..........QNQlNSV......QQS..VPS.LLqqPQQ.SVGRQQQQAQP
  160-  230 (87.57/16.44)	PNIPlQQQQQQQQQLMGQ.....QPNLERN.QLigQQ...NGAVEMQQQQRL.....PAQS..NN..........L...LNM......QQT..QQQ.ML..NQQ...SMPLHQP..
  231-  270 (52.85/ 6.58)	.............QQLGS.....QAN...................MSSLQQQ.....QQNQ..QQ..........QRM.H.................ML....QMKAQQTQQQQHA
  468-  518 (62.42/ 9.30)	.......QPQIQQQ.............FQP.P........AGQAPNSSILQQ.....QQTS..QN..........LQQ.HDS......HTN..PQA.SL..SS.MSTGLQ......
  573-  617 (57.29/ 7.84)	.........GALQQ..GN.....TG.......L..MQ...GTM..NTQPQT........SS..GM..........LSH.NSM......STM..QPN...........GNSMQ.ANA
  618-  693 (69.18/11.22)	SSLQ.QLKQQQQDHHMMQsqqmkRQMFQQY.QQ..KQqmlQQQFPI...QQQ.....SQKQ..QQ..........VQM.QVP......QLH..AGNdVN..ESKARQGTAV.....
  694-  762 (117.30/24.88)	.......KPGIYQQHLGQ.....RSNYYHP.QL..KQ...GGAFPISSPQNL.....QQSS..PQ..........ISH.HSP......QVD..QHN.LL..PSQVKTGTPLNSANS
  763-  850 (53.29/ 6.70)	PYVP.SPSPSVAPSPIPV.....DSD.........KQ...HSN..ISSLTNTgqtghQQTSlaPQtqsiavntpgIS..ASPllaeftSVDgnQAN.M...PTQVPTKS..NAAER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.21|      15|     103|     906|     941|       3
---------------------------------------------------------------------------
  890-  904 (25.51/23.56)	GNGSRTAVGEDLVAM
  919-  933 (25.70/14.02)	GSGASKKMKRDISAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.12|      17|      17|     310|     326|       4
---------------------------------------------------------------------------
   55-   71 (25.28/ 7.30)	KLQQNSLMQPHIQQQQS
  310-  326 (27.83/ 9.01)	GMQQQSSMQQRLQTSGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     130.04|      43|      52|     364|     412|       6
---------------------------------------------------------------------------
   27-   54 (27.22/ 6.63)	AQRQMAGRQQQQQ.SqqlIYQQQQMLMKQ.........................
  364-  408 (56.02/36.16)	....LAGAGDWQE.E...IYQMIKSLKDQyfaelsDLSNKISMKLQHVDS.IMP
  409-  442 (46.79/19.92)	PQKP.........sE...QYDRMKNFK........NMLDRILQLLQISKStIQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.26|      14|     585|     349|     362|       7
---------------------------------------------------------------------------
  349-  362 (24.18/17.07)	EVSSSTS.ADSTTQT
  936-  950 (21.08/13.73)	NVSSAGSvDDSFKQT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.20|      16|      16|     538|     553|       8
---------------------------------------------------------------------------
  538-  553 (28.60/12.95)	APTQQNGANIQHQAVS
  557-  572 (27.60/12.25)	AAQGGNLNSLQHGSVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.93|      14|      33|     294|     308|       9
---------------------------------------------------------------------------
  294-  308 (21.90/12.57)	L.....MSQfQSQPNQLQQQ
  328-  346 (20.03/ 6.16)	LlqqnnMDQ.QKQFIQAQRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.72|      11|      16|    1033|    1043|      10
---------------------------------------------------------------------------
 1033- 1043 (19.36/11.92)	QTSPIMPLRLL
 1050- 1060 (19.36/11.92)	KCSPVLLDKFL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31220 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MQNVSVMPQNTMNNGLAQGTSQDIYAAQRQMAG
2) NSVQQSVPSLLQQPQQSVGRQQQQAQPSMHQQPSLQRQQPNIPLQQQQQQQQQLMGQQPNLERNQLIGQQNGAVEMQQQQRLPAQSNNLLNMQQTQQQMLNQQSMPLHQPQQLGSQANMSSLQQQQQNQQQQRMHMLQMKAQQTQQQQHAQQSPMGLMQPQSQNNQLQQSQQHLMSQFQSQPNQLQQQLGMQQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQAQRGLQEVSSSTSADSTTQTGLAG
3) PLLAEFTSVDGNQANMPTQVPTKSNAAERPMDRLLKALRTTQR
4) PVQPQIQQQFQPPAGQAPNSSILQQQQTSQNLQQHDSHTNPQASLSSMSTGLQSSGVAGMQHVPVPPTTNFSAPTQQNGANIQHQAVSNMEAAQGGNLNSLQHGSVSGALQQGNTGLMQGTMNTQPQTSSGMLSHNSMSTMQPNGNSMQANASSLQQLKQQQQDHHMMQSQQMKRQMFQQYQQKQQMLQQQFPIQQQSQKQQQVQMQVPQLHAGNDVNESKARQGTAVKPGIYQQHLGQRSNYYHPQLKQGGAFPISSPQNLQQSSPQISHHSPQVDQHNLLPSQVKTGTPLNSANSPYVPSPSPSVAPSPIPVDSDKQHSNISSLTNTGQTGHQQTSLAPQTQSIAVNTPGI
5) QKLQQNSLMQPHIQQQQSLLQPTQMQSTQQSMMQMSSGLHPVQSTVPQTQPMSRQSVTQSGIQQNQ
1
121
822
466
54
33
366
864
818
119










Molecular Recognition Features






MoRF SequenceStartStop




NANANA