<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31219

Description Uncharacterized protein
SequenceMARNLTGGLPVVNQGRMASLGPIRKCLTLTHAKRETGAPEEIGAPECKTDNGENARMHETNTPETARVEDTNKVYSECQITLKIPKSILYGSDFMVMGFPWRTNAYYLLMQLDDNLMPVFYLLEVHIDGEDRFNIDTTTDTKEVVRFNRIDIGQMQLGEDECIANLLDVEKLQVLQSMEDGSPRHSEIDESLPLKPSFSSVVKAVLGYERDSPSKENWLSYSSPSTHLSSQKVVRQGVSRRAGPPELDDELLHSNIDTAKVTSGVTLDSYLLSNLKSAYSTETSVLVPAGLENISALRSEVPSGKRYLSEFLLNIPSLQRSIISGGPRKRRKLPEDASSVQSRTTLTYGTILREGNCCITENIYASVLLQVIKHCSLRIKYAQLTTQMNSLNIPYVEEVGLGTPSSNLWLRLPFAQDGSWKHTCLRLGEAGSMSWGVRINDPYYAALWELHGGSNTTEWGSRVRIANTSEMDSHISFDYDGVTLTYNSVEADSIQRLVSELRRLSNARVFACGMRRLVRVKVDEKLVENQLATKAKLHARKGFRNRLSDQMAKNFRINAVGLMNLWFSYGANAMPMVHFVVEWEAGKVGCTMRISPDHLWPHTKFLEDFVNCNEVASFLDCIRLTAGPLLSLGGAIRPAKMPAVPAVCGSAQKQNNVLLANGSSSTTVHINSHDAQTSSMLSAVGRTGHGLVPSSLMPFDVSVVLRGPYWIRIIYRNKFSVDMRCFAGDQVWLQPATPPKGGPSIGGSLPCPQFRPFIMELIAQGLNTLEPSFLNARHTSANTSSGSQQVVTTTNRLSGGTPGGIKLTSGVGCQIAASVSRAGNATLPSGDGAPAHLSPDTNLPVHMKGELNTAFIGHGDDGGYGGGWVPHAALKKVLRGILKYLGVLWLFAQLRDILKDILGSVLKDNEGALLNLDQEQPALRFFVG
Length928
PositionTail
OrganismTriticum urartu (Red wild einkorn) (Crithodium urartu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.07
Grand average of hydropathy-0.209
Instability index47.30
Isoelectric point8.05
Molecular weight101765.93
Publications
PubMed=23535596

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31219
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     206.44|      52|     154|     396|     448|       1
---------------------------------------------------------------------------
  396-  448 (93.24/68.57)	VEEVG..LGTPSSNLWLRLPFAQD.......GSWkHTCLRLGEAGSMSWGVRINDPYYAALW
  528-  566 (59.59/37.90)	..ENQ..LAT.KAKLHARKGFRN................RLSDQ..MAKNFRINAVGLMNLW
  585-  636 (53.61/33.27)	AGKVGctMRISPDHLWPHTKFLEDfvncnevASF.LDCIRLTAGPLLSLGGAI.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.62|      15|      19|     247|     265|       2
---------------------------------------------------------------------------
  247-  262 (19.84/14.59)	LDDELLhSNIDTAKVT
  267-  281 (24.77/19.08)	LDSYLL.SNLKSAYST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.30|      18|      19|     864|     882|       3
---------------------------------------------------------------------------
  864-  882 (29.52/20.13)	Y.GGGWVpHAALKKVLRGIL
  884-  902 (28.79/14.51)	YlGVLWL.FAQLRDILKDIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.55|      16|      19|     291|     306|       4
---------------------------------------------------------------------------
  291-  306 (27.85/21.27)	LENISAL.RSEVPSGKR
  312-  328 (24.71/17.83)	LLNIPSLqRSIISGGPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     434.32|     139|     649|      63|     211|       5
---------------------------------------------------------------------------
   63-  211 (218.42/178.68)	PETARVEDTNK..VYSEC....QITLKiPKSILYGSDFMVMGFP...WRTNAYYLLMQLDDNLMPVFyLLEVHIDGedrfniDTTTDTKEVV.RFNRID...IGQMQLGED.EC.IANLLDVEKLQVLQSmEDGSPRHSEIDESLPLKPSfSSVVKAVLGYERD
  708-  861 (215.90/145.38)	PYWIRIIYRNKfsVDMRCfagdQVWLQ.PATPPKGGPSIGGSLPcpqFRPFIMELIAQGLNTLEPSF.LNARHTSA......NTSSGSQQVVtTTNRLSggtPGGIKLTSGvGCqIAASVSRAGNATLPS.GDGAPAHLSPDTNLPVHMK.GELNTAFIGHGDD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31219 with Med14 domain of Kingdom Viridiplantae
Unable to open file!