<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31218

Description U-box domain-containing protein 33
SequenceMDAACDSPEPEQSSSESGEKMKKVYVAVGAGSDSKAMVLWALHKFPRDPTATSLVLLHVYPQPKLIPIMGARIPASQVQEQELTAYKKMELQTISNTLDQHLLLCAQEKVQAEKLVVESEDVAEGLVQLITAHHITALVMGAAADKHYTKYEIVKEFDEADIKFQHMLRELESVRKQAYEEKHGREKAEQDLFEAFQRARVSENMYLGEVKQKNEIEEKLATVMEEVESLTETTDGLCAKLQEERKKRSALEKRTAHSDRIIKDLLLQRDKAVREVEALHAKKGESSATAEGTMHITELSSSEIKDATNNFDHSLKIGESVYGSVYKGFLRHTNVAIKKLNLESTQPQSQSQSQFNQEIEILSRVRHPNLVTLIGACKDAQALVYEYMPNGSLDDRLACKDNSKPLSWQLRTRIISHVCSALIFLHSNKPHSIVHSDLKASNILLDGNNVAKLSGFGVCRMVTDEFRDTTTLYRHTHPKGSFVYIDPEYVMTGDLTPLSDVYSFGIVLLRLLTGRPGFGLLRDVQRAVEKGCLGAILDSSAGGWPAMQAEQLARVGLKCCEIRRKNRPDLQKEVWTVLEPMLKPASIMLCSLSFKSVSEDLGGVPPYFICPILQDVMREPLIAADGFTYEAEAIREWIDSGHHTSPMTNLELLHRDLLPNHALRSAIQEWLQTDA
Length675
PositionTail
OrganismTriticum urartu (Red wild einkorn) (Crithodium urartu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.06
Grand average of hydropathy-0.339
Instability index45.16
Isoelectric point5.93
Molecular weight75668.64
Publications
PubMed=23535596

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31218
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     153.97|      55|     160|      77|     138|       1
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   77-  138 (79.37/65.63)	QVQEqELTAYKKMELQTI.SNTLDQHLLLCAQEKV.QAEKLVV...ESEDVAEGLVqlitahHITAL
  240-  299 (74.59/45.84)	KLQE.ERKKRSALEKRTAhSDRIIKDLLLQRDKAVrEVEALHAkkgESSATAEGTM......HITEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.82|      25|      27|     507|     532|       2
---------------------------------------------------------------------------
  507-  532 (37.89/33.54)	VLLRLLTGRPGFGlLRDVQRAVEKGC
  536-  560 (44.93/34.60)	ILDSSAGGWPAMQ.AEQLARVGLKCC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.79|      20|     160|     303|     322|       3
---------------------------------------------------------------------------
  303-  322 (34.90/19.88)	EIKDATNNFDHSLKIGESVY
  465-  484 (37.89/22.09)	EFRDTTTLYRHTHPKGSFVY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.29|      34|      36|     146|     181|       6
---------------------------------------------------------------------------
  146-  181 (52.50/43.33)	KH...YTKYEIVKEFDEADIKFQHMLRELEsvRKQAYEE
  182-  218 (49.79/34.45)	KHgreKAEQDLFEAFQRARVSENMYLGEVK..QKNEIEE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31218 with Med32 domain of Kingdom Viridiplantae
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