<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31209

Description U-box domain-containing protein 33
SequenceMAVVSRARASLPSPSSSPLPAFSPRSPQPEVAERMFTRGGSGRSSSSSASGANRSASLREIDEEATILHDADDDDGGGKLYVAVGKDIKDSRSNLIWAARNLLAGDPKLVLLHVHQPADRIMIGLCKVPASQVEEKELKAYRKIEKEEMNTLLNQYLNFCRVSLKMQAKTLVIEKNSSANGIIELIDQNRITKLVMGTSSFSVKRKVPKSKVAAGVHAQAKPYCQIFYICKETLACSREATQLCAKVESPRSSCASTISDQPELTPRSLSLPPGHPGLLGSTGQQPLPRRSNSVSYPLSGMIADSVENMSPARRQSIDSLLGSTEQKALPRRSNSVSYSLSGSIAGSVEIMSPARRQSIDMTPTGSSPSSSQQSTGGSSLGLRDLDSMDGSPVPVSVASSEEEHQHSTVEIREMFEQLHRVRNQLERSKKEASEGRQKAEKNLFESSMMFKARESSLCKEKKEVEERLTREKADLEKEHFHVCNELQKVNEQRAELESKLLQTNALMEELQQLQAELQREKDHAVKEAEEMRQTNGNSVFGSTSAVALTEFSYTEIEEATDNFDDSKKIGSGGCGTVYKGFLRHTTVAIKKFNREGTTGDKEFNDEVETLSRMRHPNLVTLIGVCREAKALVFEFLSNGSLEDCLQCEHQREPLSWRMRIKIAADICTGLIFLHSNKPKGIAHGDLKPDNVLLDTSFVCKLADFGISRPLDLTNTTVTPYHRTNQIKGTMGYMDPGYIASGEITAQYDVYSFGVVLMRLLTGKNPLGLPNEVEAALSNDMLQDIIDTSGGEWPPEYTEELARLALRCCRYERKERPNLANEAWGILQAMMNCPDDKCKPPTFFICPMTQEIMRDPHIAADGFTYEGEAIKDWLQRGHKMSPMTYLSFTHHELMPNNALRFAIQEWQMQQQP
Length911
PositionTail
OrganismTriticum urartu (Red wild einkorn) (Crithodium urartu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.05
Grand average of hydropathy-0.513
Instability index49.44
Isoelectric point6.22
Molecular weight101141.54
Publications
PubMed=23535596

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31209
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     165.77|      41|      41|     278|     318|       1
---------------------------------------------------------------------------
  278-  318 (85.33/52.19)	LLGSTGQQPLPRRSNSVSYPLSGMIADSVENMSPARRQSID
  320-  360 (80.44/48.79)	LLGSTEQKALPRRSNSVSYSLSGSIAGSVEIMSPARRQSID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.93|      23|      28|     363|     385|       2
---------------------------------------------------------------------------
  363-  385 (38.82/21.88)	PTGSSPSSSQQSTGGSSLGLRDL
  392-  414 (39.11/22.09)	PVPVSVASSEEEHQHSTVEIREM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     317.27|     100|     493|      25|     127|       3
---------------------------------------------------------------------------
   25-  127 (160.40/104.08)	RSPQPEV..AERMftRGGSGRSSSSSASG.ANRSASLREIDEEATILHDADDDDGGGKLYVAVGKdIKDSRSNLIWAARNLLAGDPKL.....VLLHVHQPADRIMIGLCK
  519-  626 (156.86/92.20)	REKDHAVkeAEEM..RQTNGNSVFGSTSAvALTEFSYTEIEEATDNFDDSKKIGSGGCGTVYKGF.LRHTTVAIKKFNREGTTGDKEFndeveTLSRMRHPNLVTLIGVCR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.53|      27|      29|     415|     441|       4
---------------------------------------------------------------------------
  415-  441 (46.86/29.94)	FE..QLHRVR.NQLERSKKEASE..GRQKA..EK
  444-  477 (28.67/15.55)	FEssMMFKAReSSLCKEKKEVEErlTREKAdlEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.51|      15|      41|     208|     222|       5
---------------------------------------------------------------------------
  208-  222 (25.99/16.29)	PKSKVAAGVHAQAK..P
  250-  266 (23.52/14.01)	PRSSCASTISDQPEltP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31209 with Med32 domain of Kingdom Viridiplantae
Unable to open file!