<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31199
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MHSEANDANKIKRVKEGNRRWKMSYSAEEMMLYRLAKTVSTGTRPKNVQEAVDLLVICVQWMDMVAASMGRGAHEMMDIEAHVEEIGMVGMALGTLMVAVVGNAKILGAIQNGRCPKGTGVDLGKAMAGFVPLLLQSSPQNAQRLDVFRTQTLITILPVDKKERAANAEINEILDSTIGMNIDNIVVADLPTVNSRAGLYIYLNSILVGRPLIDDNAIFAYLHNRYQGDVQSTTVDLILASFDVLANATFRNEGPQTTTILRSFLINKVPLLVSTLATSFFPPLTSEFCITEALSHVDTNAFPTLSTLFAESTNNDMFSDSVRQDFCFACCLHGLIPESSIETLLGDIPMQSLPAGGRYSKQDLVEQCLSDSERAEGLISELENMDGNAGAVSQAIAEVIKHMCGNRETMTLKTLCSQLARNPSSLDIMLLFNKPTLFLQPICELLDNWRYDEDQGEYQPVYEEFGSILLLVVSFAHRYNLSTVDLGIKNPAESFVAKLLVQGHLSRALDPLSQQDQNHLDGWIRGLFEPEGGGLGDELMSSCPPQEFYLLVPTLFHHIVLALSTENLSEDGLKGGLEFMVEPFLLPSLIPGITWLSAHLWEARPQATYVLQILSALIKSPPSISNNMEASHLLNAILKIIAQNLEQSLRWLQRAEPHRHDIDSISKALESNVGWERKGASKYSELEVWTATPGGGLAASIKHTVVTLVQWGLQCDRNPGMQIMPASYTHRQVLTGLKMLGAKRLLNTIIEEVKTQTEAGNGSVVLDIATSLICAPDSASFDSGSGVDIMSGNTPQLLQRRLTLREALKAEAENMPKVHKTDTFHAETVIRLYRRVEAQAVIQQQLLPDDNDLGALNEVMGDAVMGDAGLGPVDQPNLNMDDMGAGSDDLMMMGGSGHGGDLLDAFGGDGLGDGMGF |
Length | 917 |
Position | Tail |
Organism | Botryotinia fuckeliana (strain BcDW1) (Noble rot fungus) (Botrytis cinerea) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes>
Helotiales> Sclerotiniaceae> Botrytis.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -0.039 |
Instability index | 44.28 |
Isoelectric point | 4.87 |
Molecular weight | 100109.39 |
Publications | PubMed=23704180
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP31199
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 279.63| 146| 369| 349| 537| 2
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75- 151 (64.96/20.24) EMMDIEAHVEEIGM...VGMALGTLMVAVVGNAKilgaiqngRCPKGTgVDLG.KAMA.GFVP.LLLQSSPQNAqrLDVFRTQ................................................................................................................................................................................................................................................................................................................
349- 428 (52.97/48.25) .........................................................................................................tlitilpvdkkeraanaeineildstigmnidnivvadlptvnsraglyiylnsilvgrpliddnaifaylhnryqgdvqsttvdlilasfdvlanatfrnegpqtttilrsflinkvpllvstlatsffppltsefcitealshvdtnafptlstlfaestnndmfsdsvrqdfcfacclhglipessietllgdiP.MQSLPAGgrYS.KQDLVEQCLSDSERA.EGLISELENMD..GNaGAVSQAIAEVIkhMCGnRETMTLKtlcsqlarNPSSLDI
444- 537 (81.83/92.72) ELLDNWRYDEDQGEyqpVYEEFGSILLLVVSFAH........RYNLST.VDLGiKNPAeSFVAkLLVQGHLSRA..LDPLSQQdqnhLDGWIRglfEPeGGGLGD..........................................................................................................................................................................................................................................................................................
686- 789 (79.86/34.31) .......................................................................................LEVWTA...TP.GGGLAA..................................................................................................................................................................................sikhtvvtlvqwglqcdrnPgMQIMPAS..YThRQVLTGLKMLGAKRLlNTIIEEVKTQTeaGN.GSVVLDIATSL..ICA.PDSASFD........SGSGVDI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 59.85| 17| 43| 854| 871| 4
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854- 871 (27.11/18.66) GALNEVMGDAVMGDaGLG
900- 916 (32.74/18.44) GDLLDAFGGDGLGD.GMG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 97.71| 31| 35| 277| 311| 5
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277- 311 (44.94/49.38) ATSFFPPLTSEFCITEALsHvdtNAFP..TLSTLFAE
315- 347 (52.77/41.26) NDMFSDSVRQDFCFACCL.H...GLIPesSIETLLGD
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