<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31191

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMSTLPSNHPLSLRPAPNTSSTSIPLPQLIARINAERGGFRNISEDSLRLEIAEAEAGGNEEENESSSEDGEAEEEPDRLKELLTARDEILGQIEHAHNAAMISLDFISLLLSKDAPVQASTSISPSLRELAGMGTLGADKTVASRYTKEQNQENKKIAKGWKASNLSKTVDSILASATRLEKEIDAETKYWEQVLAVSESGWAVCRLPQEKHTLGVRFGFSEASPTFRNRSLGALRRNPDGSIYLDQGIASPEPQSIRVLIETNGVTTGETILPKAVPHDAPIQDLILQARNTIFASELWQEMTREVRTLASHGLQSDSKTNTIRFPISPTKRILIELQAVPTDPFRPVLGPRPDSYLANGIYLTLHLLLSLSHRQQYRIRTRPPPPISSQPRPNNPFPILRSLVTRLAHETVVSSLHSLLTPLCKTLTSASLPTPPTYTISPGTSPPLLHLSTPERILTALTNQLEFFTTITFPFPLSSPPHSSIPSSFSHTTPLTPLPSSLQIRTVTTTLNYSRPIYYLRITPETSPLLQICPPPNTVPEWDYVKNYILWTVSCWLAHIFSSSSKTSEDKEEPWKPTTQPNILRKTFSGESPNEGGVKQICFDVSSIPILGPEAPTKIGEKEKEKIKISVRWEWTTGMEQEWKDKKDLKSGEGVYDWYYGGGGDGIAELQGGELEKMVRKMGDVVEEAGRGRSRS
Length697
PositionHead
OrganismBotryotinia fuckeliana (strain BcDW1) (Noble rot fungus) (Botrytis cinerea)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes> Helotiales> Sclerotiniaceae> Botrytis.
Aromaticity0.06
Grand average of hydropathy-0.437
Instability index60.73
Isoelectric point6.13
Molecular weight77135.43
Publications
PubMed=23704180

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31191
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     229.63|      37|      38|     364|     400|       1
---------------------------------------------------------------------------
  310-  333 (28.92/11.23)	..............................L...........AS.....HGLQ..........SDSKTNTIRF........PISPTKR
  342-  393 (54.33/28.32)	PTDPFrP........VlgprpdsylangiyL...........TL.....HLLL..........SLSHRQQYRIRTRP..PPPISSQPR
  394-  454 (38.70/17.81)	PNNPF.P........I...........lrsLvtrlahetvvsSL.....HSLLtplcktltsaSLPTPPTYTISPGT..SPPLLHLST
  455-  483 (43.62/21.11)	PERIL.T........A..............L...........TN.....QL..................EFFTTITF..PFPLSSPPH
  495-  535 (32.00/13.30)	PLTPL.P.........................sslqirtvttTL.....N..............YS.RPIYYLRITPetSPLLQICP.
  536-  582 (32.06/13.34)	PPNTV.PewdyvknyI.............lW...........TVscwlaHIFS..........SSSKTSED..KEEP..WKP.TTQP.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.91|      15|      98|      13|      28|       2
---------------------------------------------------------------------------
   13-   28 (24.97/21.16)	RPAPNTSSTSIPlPQL
  113-  127 (26.94/17.29)	KDAPVQASTSIS.PSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31191 with Med17 domain of Kingdom Fungi
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