<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31181

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMTSTGLSHFSLRPWPTADKKPKTINEFVSRISVERGGFHNVPPEAEIREEAVIEAQQVARIEDDAMEGLSESEDDADADKIKSAWVARQEVLMSLDYAHNQAMLGLQFISLLLSKEKPSHVGSTLSPELRDMVGIGTLGASKLKDSNITEARIKDDYAVIVGWQLMGIEYMVNTVNEAAERMEKEIELETKFWNDICQIREERYHVFEHPQNPQSLAVRFNSSESAQWHHDQCIGGLRRSDDGTVRLVTGPIGLGHKQVRVTVMVNGKITGRTPVLRRLAESAPIQDQIHAARATSTNQELWHEINREARSLLSLGVIADQSSVTCNLTPRVKVIFTLEEMANEQFESTEIDLPHNTEADLVDWIMTSLLTHAHEDNYQRRKYPQSPAPNRTNPYPIYLLLRPLIAHARYLDGYAGLVSFLDQLVDLLRRAGATTAAYSKFSSQTGRPPHIPPERWNYAGEFLANQVMYTMELALHVIMTPDASVQIRSATHPMPYVAHRFAVVLPPSGAQQQNGTNGSGNPTAIGNNNNIQEQQQQLQQHPPQPQPPSLLESAYPPSSDPYHNHHSVIEYFKNAAPRALAAHLAASAQRRAMDQMRDVDDDSTIMWIETMRGPAVTIDSHPEREVYVNFYFEEGGVGNGAYGDSEDSEDDEEPQRHKRCLVLKLDGRWIGTVAGSGGKGSVRQCTGSWVWRPFAPSGVDRHGAEIQESPEDIVWSVLMAGER
Length723
PositionHead
OrganismEutypa lata (strain UCR-EL1) (Grapevine dieback disease fungus) (Eutypa armeniacae)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Xylariomycetidae> Xylariales> Diatrypaceae> Eutypa.
Aromaticity0.07
Grand average of hydropathy-0.506
Instability index53.82
Isoelectric point5.43
Molecular weight80814.63
Publications
PubMed=23723393

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364140
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP31181
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     161.65|      44|      61|     607|     650|       2
---------------------------------------------------------------------------
  607-  650 (79.41/50.77)	WIETMRGPAVTIDSHPEREVYVNFYFEEGGVGNGAYGDSEDSED
  669-  712 (82.23/52.83)	WIGTVAGSGGKGSVRQCTGSWVWRPFAPSGVDRHGAEIQESPED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.06|      32|      62|     361|     393|       6
---------------------------------------------------------------------------
  361-  393 (56.50/42.89)	LVDWIMTSLLTHAHEDNY..QRRKYPQSPaPNRTN
  424-  457 (54.56/36.49)	LVDLLRRAGATTAAYSKFssQTGRPPHIP.PERWN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.89|      33|     333|     198|     230|       8
---------------------------------------------------------------------------
  198-  230 (62.52/36.22)	QIREERYHVFEHPQNPQ..SL..AVRFNSSESAQWHH
  530-  566 (55.37/31.25)	NIQEQQQQLQQHPPQPQppSLleSAYPPSSDPYHNHH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.20|      12|      14|     247|     259|       9
---------------------------------------------------------------------------
  247-  259 (17.14/13.73)	LVTGPIgLGHKQV
  264-  275 (22.05/12.27)	MVNGKI.TGRTPV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31181 with Med17 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HLAASAQRRAMDQMRDVDDDSTIMWIETMRGPA
2) PSGAQQQNGTNGSGNPTAIGNNNNIQEQQQQLQQHPPQPQPPSLLESAYPPSSD
583
507
615
560










Molecular Recognition Features






MoRF SequenceStartStop




NANANA