<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31180

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMTANKMPLLLDNPMGGDAMHVDLDDVDDLFGDGVPLGLHPRPPSKRLHQRLDELRGKGACRTIAWSKTGTIASIVPGGQSMELRYIRANPKDGTWGLSEPTPFTPWPNLNGGPLVHLSWSPTNMSSELAVVDAVGRVLIYNFGANLNRPTLIRMWDADPVDDLHAVVGTYWLNIVPPNPAKLNPVNGSKIEETTLGLETVTSADDLVTHAAVCSDYKNKCMFVAVATASKQVRIVQVIINWNVPKQENPQQVVLTVRSFVPPPNSPYNQEVQSVIDRWELLMEQKETLHPAFEQLGSRRNSNSNAPPASIRLRKLESIVVNKIVTGISVISHGKIICFTYTDGSVEYRDRFTLEELYSEVKLDRFSSILEAGFTQRGDNLWEYKPREFSSKLALIMLNLRNIVILITMANNTTAIRGAGNPMDDPDVVNALAGCCKWTVDLLSWLCDSLFCLLNDNKFKSILTNQAQFSQLTSYLHEKNEIALHMVLCSSIRSLLGGVCRRITLLNNLSHRAISHYENSPPGGGKGSGYGSPLHTAYQKVYRHTSAALINPEAFQALLASLNREVREVYGKSFAKMAEQASKAQQQQQQQHPNHQRNSGGGDEAVARARQHCELQMLLGQAPPSTFQPLIAKFLYQDLAAFRDGPGNGGPPGGAAAIAAAVAAGGNNNNNNNAAAAAAAAAAATTIDPARLFFADYDILEVDDTPGALERRRARGAHVDLFKRVEITKGGSSRGGSGSGSGSNVPWRRCVRCASVMEDVAAATAAAAAAGNGNGNGGNNNNNNRPQLNVVLSQQRNCSCGGRLAWVP
Length807
PositionTail
OrganismEutypa lata (strain UCR-EL1) (Grapevine dieback disease fungus) (Eutypa armeniacae)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Xylariomycetidae> Xylariales> Diatrypaceae> Eutypa.
Aromaticity0.06
Grand average of hydropathy-0.271
Instability index37.44
Isoelectric point8.39
Molecular weight87515.15
Publications
PubMed=23723393

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31180
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.81|      10|      84|     674|     683|       3
---------------------------------------------------------------------------
  674-  683 (17.28/ 8.48)	AAAAAAAAAA
  760-  769 (17.53/ 8.68)	AAATAAAAAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.02|      23|      34|     108|     139|       4
---------------------------------------------------------------------------
  108-  131 (37.53/36.17)	NLNGGPLVHLsWSPTNMSSELAVV
  145-  167 (42.49/19.53)	NLNRPTLIRM.WDADPVDDLHAVV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.66|      43|      93|     363|     411|       5
---------------------------------------------------------------------------
  363-  411 (65.45/65.59)	DRFSSIL..EAGFTQrgdnLWEYKPREfsSKLALIMLNLRNIVIL.......ITMANN
  456-  507 (63.21/45.06)	NKFKSILtnQAQFSQ....LTSYLHEK..NEIALHMVLCSSIRSLlggvcrrITLLNN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31180 with Med16 domain of Kingdom Fungi
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