<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31163

Description Uncharacterized protein
SequenceMNQAPIIATHNEGTNVVPDRNWRSTLTASEKHAIIFHLVSALRAVSSNVSQEHLIAIVNAFEKQAYEKANSKTEYINICNSKLMYIKGSTAAKQHLSQAQNQRTTMPFFPQTPCQQVISGQMKTFEMSGASNLVSPSFTHSPRMSRQAMSSHSQFQQVPPLVNQQMTLQQKQMLMRQASVNQHLSNQNLMQGLSHSVNQQTHASNSASDALKRSAYSVPQQKAPQIQQMLTQLQTQNNQQQIPKYMSHQACVSQGLDERHQALNQQKIPISPQTDIYQQRVDNPLLNSSNTNLQKLLVLNQAIQSQNKQLNQPLSQTKQLLSNQTLQNFLSQAQAPVQQVVNQQAQKMPGHAIGSSTPSQEFKKKMDPYLNPCNYLIPQRILSQFPELPTNVFTWSQVAELIRNQRLSPEQVARLHELFYQHALYLQLHYQQIQYMSNQSSNQFRPQSPLQPTSQHHSVNPNPHIQQQMRKIPVQQMQQISKGGVSSEFLQHEWSSDTSNFPTQYSHSFSPNINVSLNNQTPQQLHPQSIDQLLTMVQCDNISGLKKKARVSLKVKKKDDIRSVNDQLPVLQTFNMASVSTQNQQTAQIRQDSSKNRPDISIVQRILMCGGKEANIQMNVRLRQIQNEVERNGVKNIPLNDLTHIQKQQVCELIAEMSQMYHRIDMLLPLFMILSWNESAIIQLLRMKLIYKNQLDVLPQGIYLCYPSQLIKIKKMISEYFKFVKISVQAIQKQIENGKSLPDKIPINLSEIDPNISNFQSFLEDFSSLEASNEASLLNPLKTDIKTNAKVDNSEIISINENKFDVTNNSDGIDLQIRENNISNSYDKSGSQTFELSKDSFYSQENNKIIEDPLDYTVLNVTNVLETDDVNMILSMDKSSLFNEEKSMDVLSNKFGSEIISSLVTKIPQSFTNIPLNHFSGKVQNDSNNISTIKNENLSSPETAFSLVTSDVLGTEKTLNDLDFEQYFDSTFNDKFYENNTSSFDKLQEKNVESLFFIDETNVENGLSEELEWDFGVFDIGSFKIKDFYASNNENIWNEELKTEDLSTIGLGIIANVY
Length1058
PositionTail
OrganismPneumocystis murina (strain B123) (Mouse pneumocystis pneumonia agent) (Pneumocystis carinii f. sp. muris)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Taphrinomycotina> Pneumocystidomycetes> Pneumocystidaceae> Pneumocystis.
Aromaticity0.07
Grand average of hydropathy-0.569
Instability index51.34
Isoelectric point6.36
Molecular weight120386.25
Publications
PubMed=26899007

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31163
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     557.31|      82|      82|     205|     286|       1
---------------------------------------------------------------------------
   85-  175 (68.02/22.81)	.......YIK..G.STAAKQHLS...QAQNQRtTMP......FFPQTPC.QQVISGQMKtfemsgasNLVSPS.F.THsprmsrqamSS.HSQFQQVPPL.VnQQMtLQQKQMLM
  176-  237 (84.88/30.06)	RQASVNQHLS..N.QN.LMQGLS..H.SVNQQ....................T.....H......asNSASDA.L.KR.........SA.YSVPQQKAPQ.I.QQM.LTQLQTQN
  238-  321 (119.25/44.84)	NQQQIPKYMS..H.QACVSQGLDERHQALNQQ.KIP......ISPQTDIYQQRVDNPLL........NSSNTN.L.QK.......llVL.NQAIQSQNKQ.L.NQP.LSQTKQLL
  322-  396 (93.62/33.82)	SNQTLQNFLS..QaQAPVQQVVNQQAQKMPGH.AIG......SSTPSQEFKKKMD.PYL.................NP.........CN.YLIPQRILSQ.F.PEL.PTNVFTWS
  404-  475 (69.39/23.40)	NQRLSPEQVArlH.ELFYQHAL...YLQLHYQ.QIQ.....yMSNQSS.NQFRPQSPL.................qPT.........SQhHSV..NPNPH.I.QQQ.MRKIPVQ.
  476-  540 (68.55/23.04)	QMQQISK........GGVSSEFLQHEWSSDTS.NFPtqyshsFSPNINV........................sL.NN.............QTPQQLHPQsI.DQL.LTMVQC.D
  541-  591 (53.61/16.62)	NISGLKK.......KARVS...............LK......VKKKDDIRSVNDQLPVL........QT.....F.NM.........AS.VSTQNQQTAQ.I.RQ..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     419.66|     111|     132|     757|     871|       2
---------------------------------------------------------------------------
  669-  779 (141.75/80.78)	PLFMILSWN.......E.SAIIQllrmklI..YKN......QLDVL..PQGIYLCYPSQLI..KIKKMISEYFKFVKISV..QAIQKQIENgkslP.DKIPINLSEI.......................dpniSN.FQSF.LEDFSSLEASNEASLLN
  780-  913 (154.87/101.90)	PLKTDIKTN...AKVDN.SEIIS......I..NEN......KFDVTnNSDGIDLQIRENNIsnSYDKSGSQTFELSKDSFYsQENNKIIED....PLDYTVLNVTNVLETDDVNmilsmdksslfneeksmdvlSNkFGS...EIISSLVTKIPQSFTN
  915- 1038 (123.04/69.10)	PL......NhfsGKVQNdSNNIS......TikNENlsspetAFSLV.TSDVLGTEKTLNDL..DFEQYFDSTF...NDKFY..ENNTSSFD....KLQEK..NVESLFFIDETN.....venglseelewdfgvFD.IGSFkIKDF...YASNNENIWN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31163 with Med15 domain of Kingdom Fungi
Unable to open file!