<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31144

Description Uncharacterized protein
SequenceMANNPQSSAAQPFRPPPVASLGPQSFGSSPSLQYRPVVPTQQGQQFIQSASQQFQPVGQGIPSSNVGMPASQSQQLQFSQPMQPYPLRPSQPGHATPSSQALPMQYMQTRPITSAPSQSQQPALPFNNQMPGLAGGGMPYSSSYIFAPPSYAQPQNNVSSSSQFQPISQVQAHVSVTGQPWVSSGNQGAAVPTPVPQSGQQPSSTTFTDSAVNVPSQTQQSSSDWQEHTSGDGRRYYFNRRTKQSSWEKPLELMTPMERADASTVWKEYTSSDGKKYYYNKVTRESKWTIPEELKLAREQAQRELAQGTRSEMNLTSHAPPAVASAETPMGSSSVGPSTSSALPGMVSSPVAVIPVSSFSNPSPIAPTGSSVASGAQSSITGGVGIQPPVVTVTPPPASVSGSTGVPPTLVNAITKSVSTFENVTSQDIGSADDGAFTQDIEEAKRGMAVAGKVNVTPSEEKTVDEEPLVYASKQEAKNAFKALLESANVHSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLENEERRMRQKKAREEFSKMLEESKELMSATRWSKAVSMFENDERFKAVERARDREDLYESYIVELERKEKEKAAEDHKQNIAEYRKFLESCDFIKVNSQWRKVQDRLEDDERCLRLEKLDRLLIFQDYIRDLEKEEEEQKKIQKEQLRRVERKNRDEFRKLMEEHVADGTLTAKTYWRDYCMKVKDLSSYEAVASNTSGSTPKELFEDVAEELEKQYHEDKARIKDAMKLGKVTLASTLTFEEFKVAILEDIGFPSISDINFKLVYEELLERAKEKEEKEAKKRQRLGDDFNKLLHTFKEITASSNWEDCKHLFEETQEYRSIGEENFSREVFEEYITNLQEKAKEKERKREEEKAKKEREREEKEKRKDKERKEKEREREKEKGKERSKKDETDSENVDITDSHGHKEDKKREKDKDRKHRKRHQSSMDDVGSDKEEKEESKKRRHSSDRKRSRKHTPESDSESRHRRHKREHQDGSRRNGGYGELEDGEVGEDGEIQ
Length1031
PositionUnknown
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.07
Grand average of hydropathy-1.107
Instability index61.44
Isoelectric point6.29
Molecular weight117202.58
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
cytosol	GO:0005829	IEA:EnsemblPlants
mediator complex	GO:0016592	IEA:EnsemblPlants
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31144
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     364.99|      65|      65|     881|     945|       1
---------------------------------------------------------------------------
  513-  572 (61.31/24.47)	.....KT.LGERKQAFN...EylGQR..K........................................KLENEERR.....MRQKKAREEFSK............ML..EESKELMSAT...RWSK.....AVSMF...............E
  573-  660 (58.17/22.87)	NDERFKAvERARDREDL...Y..ESYivE........................................LERKEKEK.....AAEDHKQNIAEY............RK..FLESCDFIKVN.SQWRKvqdrlEDDERclrlekldrllifqdY
  661-  740 (48.07/17.71)	IRDLEKE.EEEQKKIQK...E..QLR..R........................................VERKNRDEfrklmEEHVADGTLTAK..tywrdycmkvKD..LSSYEAV.ASN.TSGSTpkelfED...................
  742-  853 (35.75/11.43)	..AEELE.KQ..YHEDK...A..RIK..DamklgkvtlastltfeefkvailedigfpsisdinfklvyEELLERAK.....EKEEKEAKKRQRlgddfnkllhtfKE..ITASSNWE..DcKHLFE.....ETQEY...............R
  882-  944 (92.96/40.63)	KREEEKA.KKEREREEK...E..KRK..D........................................KERKEKER.....EREKEKGKERSK............KD..ETDSENVDITD.SHGHK.....EDKK.................
  945- 1012 (68.73/28.26)	.REKDKD.RKHRKRHQSsmdD..VGS..D........................................KEEKEESK.....KRRHSSDRKRSR............KHtpESDSESRHRRH.KREHQ.....DGSRR................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     248.07|      40|      40|     222|     261|       2
---------------------------------------------------------------------------
  135-  171 (30.46/12.13)	....G..GGMPY.......S..........SSYiFAPPSY...AQPQNNVS......................SssqfqpiSQV.Q
  172-  226 (42.38/19.74)	AHVSV..TGQPWV.................SSG.NQGAAV...PTPVPQSGqqpssttftdsavnvpsqtqqsS.......SDW.Q
  227-  267 (64.28/33.71)	EHTSG..DGRRYYFNRRTKQ..........SSW.EKPLEL...MTPMERAD.....................aS.......TVW.K
  268-  302 (47.06/22.73)	EYTSS..DGKKYYYNKVTRE..........SKW.TIPEEL...KLAREQAQ...................................
  337-  375 (26.06/ 9.32)	PSTSSalPGM..........vsspvavipvSSF.SNP.......SPIAPTG......................S.......SVAsG
  376-  407 (37.83/16.83)	AQSSI..TG.....................GVG.IQPPVVtvtPPPASVSG......................S.......TGV.P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      54.02|      14|      17|      24|      37|       3
---------------------------------------------------------------------------
   14-   34 (17.85/ 7.50)	RpPPvaslgpQSFGSSPSLQY
   35-   54 (17.96/ 7.60)	R.PVvptqqgQQFIQSASQQF
  110-  126 (18.21/ 7.82)	R.PI.tsapsQS..QQPALPF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.78|      17|      34|      55|      72|       4
---------------------------------------------------------------------------
   55-   72 (29.22/17.95)	QPVgQGIP..SSNVG..MPASQ
   80-  100 (27.55/12.20)	QPM.QPYPlrPSQPGhaTPSSQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31144 with Med35 domain of Kingdom Viridiplantae
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