<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31142

Description Uncharacterized protein
SequenceMDQNQRSSSSSASASRAYQFHPARAAIVNLFDLYLGRSSRQKPEDSVREPPNKSQKRVVALNRELPPRNEQFLLDFEQLQSQFPDQEQLRVVTESVLISLVVQCSNHAPRAEFLLFALRSLCTIGHINWDSFLPSLFSSVSTAEMSVGQGSQAMPAVSSQSGMLQSSNNILHSSNFQSSNPASPLPAVHGIGSPSQSAIEPSSCVTMSPVKSSDMPCNGQQATARVNSSIRDNAISSLRQLCCKIILTGLEFNLRPVTHADIFSHMLNWLVNWDQKQLGVDESDGVKSWRPGKALIEWLHSCLDVIWLLVDEDKCRVPFYELLRSGLQFMENIPDDEALFTLILEIHRRRDMMAMHMKMLDQHLHCPTFGTHRIFSQTTPSVSGEAVASLRYSPITYPSVLGEPLHGEDLATSIPKGSLDWERALRCIRHALCTTPSPDWWKRVLLVAPCYRSPSQGPTPGAVFTSEMICEGTIDRIVELLKLTNSDINCWQEWLVFSDIFFFLIKSGCVDFVDFVDKLVSRLTEGDQHILRTNHVTWLLAQIIRVELVMSALNADARKVETTRKILSFHKEDRSSDPNSPQSILLDFISSCQNLRIWSLNTTTREYLNNEQLQKGKQIDEWWRQASKGDRMMDYMNMDDRSIGMFWVVSYTMAQPACETVINWLSAAGVAESLPGTNLQSNERLMVMREVSPLPMSLLSGFSINLCLKLAYQMEESLFSGQVVPSIAMAETYTRLLLIAPHSLFRSHFSHLAQRNPSVLSKPGVTLLVLEILNYRLLPLYRYQGKSKALMYDVTKIISALKSKRGDHRVFRLAENLCMNLILSLRDFFFVKREGKGPTEFTETLNRITVVTLAIIIKTRGIADADHLLYLQTMLEQILATSEHTWSDETLRFFPPLLRDFLIPRIDKRGVAIQAWQQAETTVINQCTQLLSPSADPTYAMTYLSHSFPQHRKYLCAGAWILMQGHPENINSVNLARVLREFSPEEVTHNIYTMVDVLLHHIQLELQHGHSLQDLLLKACANLAFYIWTHELLPLDILLLALIDRDDDPHALRIVMSLLDRQELQQRVKLYCMNRGPPEHWIYTGVFKRVELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLIVYRLIENDAKDSAERVLAMYSQFLAYHPLRFTFVRDILAYFYGHLPVKLIVRILNGLDINKIPFSESFPSHVNSSNSAMCPPPDYFATLLLGLVNNVIPPLHNNSKSGSVSDALNNSMRAPPNKTPATSQSGQTNVSDGQKAFYQIQDPGTYTQLVLETAVIELLSLPVSASQIVSSLVQIVINIQPTLIQSSNGLHGAPNGVGQGSVLPTSPSGGSTDSLGTSRSTASVSGINASNFVSRSGYTCQQLSCLLIQACGLLLAQLPSDFHVQLYIEASRIIKETWWLTDGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHLIIKHLRPVTSVAMLRIAFRIMSPLLPKLANAHTLFSKTLSLILSMMVDVFGKNTQPPTPVEPLEIADLIDFFHHIIHYEGQGGPVQANSKPRPEVLALCGRAAESLRPDIQHLLFHLKPDTNSSIYAATHPKLVQNAS
Length1605
PositionTail
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.08
Grand average of hydropathy-0.068
Instability index50.21
Isoelectric point6.57
Molecular weight179940.72
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31142
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.92|      11|      17|     375|     385|       1
---------------------------------------------------------------------------
  375-  385 (21.42/11.87)	FSQTT.PSVSGE
  392-  403 (17.51/ 8.26)	YSPITyPSVLGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.45|      17|      18|     100|     116|       3
---------------------------------------------------------------------------
  100-  116 (31.40/23.75)	LVVQCS.NHAPRAEFL..LF
  118-  137 (24.05/15.99)	LRSLCTiGHINWDSFLpsLF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.60|      13|      19|     410|     425|       5
---------------------------------------------------------------------------
  410-  425 (16.03/17.56)	LATSiPkgSLD.WERAL
  432-  445 (23.56/11.79)	LCTT.P..SPDwWKRVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     150.14|      45|     325|    1058|    1102|       6
---------------------------------------------------------------------------
 1058- 1102 (84.03/63.85)	LLDRQELQQRVKLYC.MNRGPPEHWIYTGVFKRV.ELQKALGNHL...SW
 1384- 1433 (66.11/48.34)	LLAQLPSDFHVQLYIeASRIIKETWWLTDGKRSLgELDSAVGYALldpTW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.48|      22|     325|     490|     519|       7
---------------------------------------------------------------------------
  289-  319 (27.72/ 9.95)	WRpgkaliEWLHSClDVIWLLVDEDkCrVPF
  491-  512 (44.76/39.55)	WQ......EWLVFS.DIFFFLIKSG.C.VDF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.75|      11|      15|      61|      72|       8
---------------------------------------------------------------------------
   61-   72 (15.95/15.05)	LNRELPPRnEQF
   79-   89 (19.81/12.39)	LQSQFPDQ.EQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.63|      15|      19|    1219|    1233|       9
---------------------------------------------------------------------------
 1219- 1233 (27.92/15.76)	NNVI..PPLHNNSKSGS
 1239- 1255 (23.71/12.23)	NNSMraPPNKTPATSQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.71|      12|      16|    1147|    1159|      11
---------------------------------------------------------------------------
 1147- 1159 (18.61/15.03)	FLAYHPLRFtFVR
 1165- 1176 (22.10/12.63)	FYGHLPVKL.IVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.85|      13|      16|     172|     184|      13
---------------------------------------------------------------------------
  172-  184 (23.27/13.57)	HSSNFQSSNPASP
  189-  201 (21.58/11.97)	HGIGSPSQSAIEP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31142 with Med23 domain of Kingdom Viridiplantae
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