<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31135

Description Uncharacterized protein
SequenceMAQLPTEMKNASWSKANSVFQSLSLAHDSQATMAAMEGVVQNQPPQPQQQQPPQPMAVERLNDAVQQQLNLESVKTRAISLFKAISRILDDLNAYAYANTTPKWQDILSQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTVLPVMLSSKLLPEMEVEDNAKREQLLHGLQSLPIGSQIEKLKARIDMIGAACESAEKVLADTRKAYCFGTRQGIPIVPTLDKAQAAKIQEQENLLRAAVNFGEGLRLPVDQRQNTTALPMHLVDVLTVGDGAQPFAETSGMYLKNTPVSSSNLTAQSPLMQVSGSQLMGRPAASPGGTSVSNFDNTTTSPLPYANSPRSSTNMMNTPSPQQQSQQQKQQQQQQQQQKLMQLPQHQQQQLLAQQQFRQSAMQGLGQNQLQQLHDLQGAQKFQSLHGQHQMQFSQPLGHQQFQGRQLPSGHVQHGIGQNQLNPGNQMNRHLGQFSGAANSALFNAAQTTPSQMIPNISATMPSQSLLPRMQFELSGNNPQRSHASQMLSDQMFNMGAANTSGMMPIQQQQQQQQQQQQHGSQGAFGNIPPNAQNLQPNMVALQGTPQNHPNFGQQRQQNQQ
Length594
PositionHead
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.04
Grand average of hydropathy-0.662
Instability index58.16
Isoelectric point8.93
Molecular weight65450.89
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31135
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     259.49|      43|      44|     355|     397|       1
---------------------------------------------------------------------------
   20-   55 (54.38/14.02)	FQSLS..LAHDS........................Q..ATM......A........AM.EG..vvQNQPPQPQ...................QQQPPQP
  370-  414 (68.58/19.72)	QQKLMQLPQHQQ........................Q..QLL......AQQ.QFRQSAM.QG..lgQNQLQQLH...................DLQGAQK
  415-  460 (54.63/14.12)	FQSLH..GQHQM........................QfsQPL......GHQ.QFQGRQLpSG..hvQHGIGQNQ...................LNPGNQM
  461-  546 (40.00/ 8.25)	NRHLGQFSGAANsalfnaaqttpsqmipnisatmpsQ..SLL......PRM.QFELSGN.NP....QRSHASQMlsdqmfnmgaantsgmmpiQQQQQQQ
  547-  594 (41.90/ 9.01)	QQQ....QQHGS........................Q..GAFgnippnAQNlQPNMVAL.QGtpqnHPNFGQQR...................QQNQQ..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     115.68|      32|      40|     264|     303|       2
---------------------------------------------------------------------------
  243-  262 (22.64/ 6.21)	..............AVN.......F..GE..GLRL...PVDQRQ.NTTA..
  264-  303 (53.14/43.27)	PMhlvdvltvG.DGAQP.......F..AETSGMYLKNTPVSSSN.LTAQSP
  312-  354 (39.89/20.08)	LM........GrPAASPggtsvsnFdnTTTSPLPYANSPRSSTNmMNTPSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.53|      11|      42|     485|     495|       3
---------------------------------------------------------------------------
  485-  495 (22.18/10.71)	QMI....PNISATMP
  524-  538 (17.35/ 7.07)	QMFnmgaANTSGMMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.48|      14|      40|     175|     188|       4
---------------------------------------------------------------------------
  175-  188 (23.16/14.54)	QSLPIGSQIEKLKA
  217-  230 (24.32/15.64)	QGIPIVPTLDKAQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.44|      13|     113|      87|     101|       6
---------------------------------------------------------------------------
   87-   99 (22.19/20.13)	RILDDLNAYAYAN
  103-  115 (24.25/13.57)	KWQDILSQYSMVN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31135 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AETSGMYLKNTPVSSSNLTAQSPLMQVSGSQLMGRPAASPGGTSVSNFDNTTTSPLPYANSPRSSTNMMNTPSPQQQSQQQKQQQQQQQQQKLMQLPQHQQQQLLAQQQFRQSAMQGLGQNQLQQLHDLQGAQKFQSLHGQHQMQFSQPLGHQQFQGRQLPSGHVQHGIGQNQLNPGNQMNRHLGQFSGAANSALFNAAQTTPSQMIPNISATMPSQSLLPRMQFELSGNNPQRSHASQMLSDQMFNMGAANTSGMMPIQQQQQQQQQQQQHGSQGAFGNIPPNAQNLQPNMVALQGTPQNHPNFGQQRQQNQQ
281
594










Molecular Recognition Features






MoRF SequenceStartStop




1) FGNIPP
558
563