<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31134

Description Uncharacterized protein
SequenceMAQLPTEMKNASWSKANSVFQSLSLAHDSQATMAAMEGVVQNQPPQPQQQQPPQPMAVERLNDAVQQQLNLESVKTRAISLFKAISRILDDLNAYAYANTTPKWQDILSQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENSTVLPVMLSSKLLPEMEVEDNAKREQLLHGLQSLPIGSQIEKLKARIDMIGAACESAEKVLADTRKAYCFGTRQGIPIVPTLDKAQAAKIQEQENLLRAAVNFGEGLRLPVDQRQNTTALPMHLVDVLTVGDGAQPFAETSGMYLKNTPVSSSNLTAQSPLMQMYYASSGPLTQQRQKQVSGSQLMGRPAASPGGTSVSNFDNTTTSPLPYANSPRSSTNMMNTPSPQQQSQQQKQQQQQQQQQKLMQLPQHQQQQLLAQQQFRQSAMQGLGQNQLQQLHDLQGAQKFQSLHGQHQMQFSQPLGHQQFQGRQLPSGHVQHGIGQNQLNPGNQMNRHLGQFSGAANSALFNAAQTTPSQMIPNISATMPSQSLLPRMQFELSGNNPQRSHASQMLSDQMFNMGAANTSGMMPIQQQQQQQQQQQQHGSQGAFGNIPPNAQNLQPNMVALQGTPQNHPNFGQQRQQNQQ
Length610
PositionHead
OrganismPrunus persica (Peach) (Amygdalus persica)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Rosaceae> Amygdaloideae> Amygdaleae> Prunus.
Aromaticity0.05
Grand average of hydropathy-0.680
Instability index59.08
Isoelectric point9.16
Molecular weight67318.97
Publications
PubMed=23525075

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31134
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     250.48|      44|      44|     395|     438|       2
---------------------------------------------------------------------------
  395-  431 (61.50/17.84)	...............HQQQQLLAQQQF..RQ....SAMQGLGQNQL.......QQLHDL...QGAQK...F
  432-  492 (45.76/11.39)	QSLHG.QH......qMQFSQPLGHQQFqgRQlpsgHVQHGIGQNQLnpgnqmnRHLGQF...SGAANsalF
  496-  549 (57.71/16.29)	QTTPS.QMipnisatMPSQSLLPRMQF..EL....SGNNPQRSHAS.......QMLSDQmfnMGAAN...T
  550-  574 (40.95/ 9.42)	SGMMPiQQ.......QQQQ....QQQ...........................QQQHGS...QGA.....F
  575-  606 (44.57/10.91)	GNIPP.NA......qNLQPNMV..............ALQGTPQN............HPN...FGQQR...Q
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.48|      14|      42|     175|     188|       3
---------------------------------------------------------------------------
  175-  188 (23.16/16.42)	QSLPIGSQIEKLKA
  217-  230 (24.32/17.65)	QGIPIVPTLDKAQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.86|      14|      19|     335|     353|       6
---------------------------------------------------------------------------
  335-  351 (18.28/27.35)	SPggTSVSNFDNtTTSP
  357-  370 (28.58/13.76)	SP..RSSTNMMN.TPSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.55|      12|      20|     286|     301|       7
---------------------------------------------------------------------------
  286-  301 (16.29/18.66)	MYLkntpVSSSNLTAQ
  307-  318 (24.25/13.89)	MYY....ASSGPLTQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31134 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TAQSPLMQMYYASSGPLTQQRQKQVSGSQLMGRPAASPGGTSVSNFDNTTTSPLPYANSPRSSTNMMNTPSPQQQSQQQKQQQQQQQQQKLMQLPQHQQQQLLAQQQFRQSAMQGLGQNQLQQLHDLQGAQKFQSLHGQHQMQFSQPLGHQQFQGRQLPSGHVQHGIGQNQLNPGNQMNRHLGQFSGAANSALFNAAQTTPSQMIPNISATMPSQSLLPRMQFELSGNNPQRSHASQMLSDQMFNMGAANTSGMMPIQQQQQQQQQQQQHGSQGAFGNIPPNAQNLQPNMVALQGTPQNHPNFGQQRQQNQQ
299
610










Molecular Recognition Features






MoRF SequenceStartStop




1) FGNIPP
574
579