<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31097

Description Mediator of RNA polymerase II transcription subunit 10
SequenceMSNLSPYPPAIHSPFPASAPQTPGASSADDSSDSEPDASAPFTPFTPYTPGPDGPGVNSPGRSPTTPREFLGLKGSERRRPEGTLGHVELLLEALAEELNTLQTRAEAVYAPRREEDGPLIHATVREVVDKLQQLEEAAPGLDEWVPIQVLEYLDEGRNPDDYTRTMLELTAAENQFTNGKVHAVHSYLQLLSAGIAEAFPDMAEFVPPPQIPLDDMPSAQDEGGMSGQEKSKEVREVPIVVIDEAPKVEDSAAPKGEQAVPGIPVDASQDLGGHIDVGIEEPLAPAAPTAGQ
Length293
PositionMiddle
OrganismDacryopinax primogenitus (strain DJM 731) (Brown rot fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Dacrymycetes> Dacrymycetales> Dacrymycetaceae> Dacryopinax.
Aromaticity0.05
Grand average of hydropathy-0.488
Instability index61.06
Isoelectric point4.29
Molecular weight31158.08
Publications
PubMed=22745431

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364146
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP31097
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.27|      16|      20|      33|      51|       1
---------------------------------------------------------------------------
    9-   24 (31.94/ 9.45)	PAIHSPFPASAPQTPG
   36-   51 (33.32/16.48)	PDASAPFTPFTPYTPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.82|      20|      20|     121|     140|       2
---------------------------------------------------------------------------
   66-   81 (21.33/10.16)	........TPREFLG.LKGSERR..RP
   86-  112 (19.35/ 8.62)	GHVellleALAEELNTLQTRAEAvyAP
  121-  140 (32.14/18.57)	IHA.....TVREVVDKLQQLEEA..AP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.82|      21|      51|     199|     225|       3
---------------------------------------------------------------------------
  199-  224 (29.30/25.11)	AFPDMAEFVppPQIPLDdmpSAQDEG
  253-  273 (36.52/15.26)	AAPKGEQAV..PGIPVD...ASQDLG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31097 with Med10 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DMAEFVPPPQIPLDDMPSAQDEGGMSGQEKSKEVREVPIVVIDEAPKVEDSAAPKGEQAVPGIPVDASQDLGGHIDVGIEEPLAPAAPTAGQ
2) MSNLSPYPPAIHSPFPASAPQTPGASSADDSSDSEPDASAPFTPFTPYTPGPDGPGVNSPGRSPTTPREFLGLKGSERRRPEGTLGHVELLL
202
1
293
92










Molecular Recognition Features






MoRF SequenceStartStop




1) DASAPFTPFTPY
2) HIDVGIEEPLAP
37
275
48
286