<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31089
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MSAADVTRAAFASGLSPLTWGRLVRSATGGAPYHGALYGPEICSTLLDLVAQYPSSPLLQSYLCLSLGLPPTTELSPHTPAPPALPTAPLVPLYVYLSSVLASVGRFPSPIPVQLAEPLCRLALLTHTTYNSPLLPPAASPLPLIPQFVILLSSLSHSSLSAPPTAAPELLLHTLSLLQAQHQIPLLTPSEKQAILHSIDASQTFQDVFTIAYKGLVRVRELIRIMDLGEGGMWGPMTGVGVGVEPVVVDREGEEPSLPLMSLVLASLVENRTTPFGASSHLSSRSQLLPPSPSSQLYPSLLQASISLIVLHPYPPSVKEGHPSESAYCQAVIWRSFILSRLPALLCPLPESTTVTATTTTNAGEPTTEAGPFEQALTALFTDWKSQLDQCNPPPPVPGVGAGSGAFGSDGVDEEARPPSFRIDLLRSLTSHSLLPPASAALICPSYTSADPPLSIEAAENMLTPQEYIEDRLSSASEDALAFLTRMEGDWAAHPLLASWFRDRLASASESGSLDQLAAACRLLCAHRLALDLLSLWIPVQELVDLASSFLDTFDLETVDDPQSALSLYGEIVLFCQYTSSKYHLPPPSPSPAWRTQLTPSLPRLNTDESALLSKWVKALFSPNEGIDDPMLRSTDPALLLRLTTTVFHQALVARSFDLLDSETLQNGIGYFLSSLLSWTLVGVINYLTAEVERQAPYSSLHWDVLQTLVMSESCPRVVLVVTGGAVLRLLGNGRLRALDPQGAGVGERATDGGPGGAGGPGEGLGGLREVVGRLLCLDQDRDPFTDRRHTHTLPSWSDNCQTAIREAFTSAHLNRATTLDVDAYLSVLRPPEFVHILWDACVSGASMGAMDGCRIVSSFLLSGLRSPASPPLLPYFLLVFVPTLLVDLDRQTPPQSTTLDTLVTIITSACHLSFQLERSFLKLADGALLSLELRSRLQPRVWLNALLDRLETAQGPASRLLAKRLHLVLND |
Length | 972 |
Position | Tail |
Organism | Dacryopinax primogenitus (strain DJM 731) (Brown rot fungus) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Dacrymycetes>
Dacrymycetales> Dacrymycetaceae> Dacryopinax.
|
Aromaticity | 0.06 |
Grand average of hydropathy | 0.138 |
Instability index | 52.58 |
Isoelectric point | 5.12 |
Molecular weight | 104479.50 |
Publications | PubMed=22745431
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP31089
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
5| 967.46| 199| 200| 381| 579| 1
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89- 234 (160.73/54.39) ............PLVPlyvyLSSVLASVGRFPS..PIPVQLAEPLCRLA..LLTHTTYNSpLLP......P...............................AASPLpLIPQFVI...............................................LLSSLSHSSL..SAPPTAAPELL......LHTLSLLQAqHQI.PLLTPSEKQAILHSIDASQTFQDVFtiaykGLVRVRELIRIMDL.GEGG..MW..........
235- 379 (96.56/29.94) ..............GP....MTGVGVGVEPVV....VDREGEEPSLP.....LMSLVLAS.LVEnrttpfGASshlssrS.....QLLPPSPSSQLYPSLLQASISL.IVLHPYPpsvkEGHP....SeS.AYC...QAViwrSFiLSRLPALLCPLPesttVTATTTTNAG.EPTTEAGPFEQA......LTA..........................................................................
381- 579 (339.49/122.50) FTDWKSQLDQCNPPPP....VPGVGAGSGAFGS.DGVDEEARPPSFRID..LLRSLTSHS.LLP......PAS......A.....ALICPSYTSADPPLSIEAAENM.LTPQEYI....EDRL....S.S.ASE...DAL...AF.LTRMEGDWAAHP....LLASWFRDRL.ASASESGSLDQL......AAACRLLCA.HRL.ALDLLSLWIPVQELVDLASSFLDTF.....DLETVDDPQSALSLYGEIV..LFC......QYT
591- 786 (212.55/74.14) SPAWRTQL.....TPS....LPRLNTDESALLS.KWV.KALFSPNEGIDdpMLRS.TDPA.LLL......RLT......TtvfhqALVARSFDLLD.......SE....TLQNGI....GYFL....S.SlLSWtlvGVI...NY.LTAEVERQAPYS....SL.HW..DVL.QTLVMSESCPRVvlvvtgGAVLRLLGN.GRLrALD........PQGAGVGERATDG......GPGGAGGPGEGLGGLREVVgrLLCldqdrdPFT
819- 970 (158.12/53.40) TLDVDAYLSVLRPPEF....VHILWDACVSGASmGAMDGCRIVSSFLLS..GLRSPASPP.LLP......YFL......L.....VFV........PTLLVD.LDRQ.TPPQSTT....LDTLvtiiT.S.ACH.....L...SFqLERSFLKLADGA....LLSLELRSRLqPRVWLNALLDRL..etaqGPASRLL.A.KRL.HLVL...........................................................
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