<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31088

Description Uncharacterized protein
SequenceMLTTCKREDMCSPAILTPVFMCLRRTPGTRFTITDGSDRRLLPELAGFSPHISDRRPLPELTGFSLHISDFHPMPELAGFSHRGRRYRCWNMSNNPPQSSGAQVRKVLEFTLLKFDSKQFDFRAMVPGQQGQQFVPAASQQPFHHPYGHVPPNVQSQFSQQLFPVRPGQPGHIASSSPPVVGFGTSGPPPFSSSYSFTPSSYGQQQPTPQMHASGSVPPAANSWPAPPVIQSTTLVSPVQQTPATPTDPGNLTPQSASDWMEHTSADGRKYYYNKQTKQSSWEKPLELMTPLERADASTVWKEFTTAEGRKYYYNKVTKESKWTIPEDLKLAREQAELASAKRSHSEDESTSLSRITASSSDLAVSTPVTAVVPSTSSTIPGHSTSPIPAGLAVPVTRPPPVASVTPTFAATSDTEATAMYHFVDYKEISVNGKSNMTPAGDKANVEEPMMYATKQEAKAAFKSLLESVNVQSDWTWEQTTKEIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRWRQKKAREEFVKMLEECEELSSSMKWSKALSLFENDERFKAVDRPRDREDLFDNYIVELERKEREKAVAEHRQKMAEYRKFLETCDYIKASTQWRKIQDRLEDDERCSCLEKIDRLIGFEDYINDLEKEEEELKRVEKEHVRRAERKNRDAFRTLLEEHVAAGILTAKTYWLEYCIEVRDLPQYQAVASNLSGSTPKDLFEDITEELDKQYHEDKSRVKDAMKSRKVSMVSSWMFEDFKSALSEDLSSQPVSDINLKLIYNDLVERMKEKEEKEARKFQRLAEEFTNLLRTFKEINAASNWEDVKQLVEESQEYRSIGDDNVSRGLFEEYITSLQEKAKEKERKRDEEKSRKEKDKEEKEKRKDKEKERREKEREREKERSSKREESDGDVDVSEGQKEEKRKGKDRDRKHRRRHHNSDDDVSSDRDDREESKKSSSRKHGNDRKKSRKHANTPESDSESRHKRQKKEQRESSRRGGNDELEDGEVGEDGVVSMISGYTLCKSSGCDKSENEPDAASILEQEGTMIQR
Length1047
PositionUnknown
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-1.061
Instability index60.03
Isoelectric point6.33
Molecular weight120247.52
Publications









Function






Annotated function


GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31088
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     168.12|      37|      38|     249|     285|       1
---------------------------------------------------------------------------
  223-  280 (61.97/34.07)	SWPAPpviqsttlvspvqqtpatptdPG.....NLTPQSASD.WMEHTSADGRKYYYNKQTKQS
  281-  321 (55.48/29.75)	SWEKP.......................lelmtPLERADASTvWKEFTTAEGRKYYYNKVTKES
  322-  354 (50.67/26.54)	KWT.I.....................PE.....DL..KLARE.QAELASAK.RSHSEDESTSLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     158.13|      30|      30|     856|     885|       2
---------------------------------------------------------------------------
  854-  883 (47.67/21.62)	QE.KA.KEKERKR..DEEKS..RK.....EKDKEEKEKRKD
  884-  916 (36.87/15.09)	KE.KErREKERER..EKERSskRE.....ESDGDVDVSEGQ
  917-  947 (43.14/18.88)	KEeKR.KGKDRDR..KHRRR..HH.....NSDDDVSSDRDD
  948-  985 (30.45/11.20)	REeSK.KSSSRKHgnDRKKS..RKhantpESDSESRHKRQK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     438.86|      65|      65|     521|     585|       3
---------------------------------------------------------------------------
  455-  517 (73.06/45.94)	.KQEAKAAFKSLLES...V.NVQSDWTWEQTTK.....EIVHDKRYGAL......R...TL.GE.RKQAFNEYLGQ..R.KkvEAE.E
  521-  585 (107.64/71.68)	RQKKAREEFVKMLEE...CEELSSSMKWSKALS.....LFENDERFKAV......D...RP.RD.REDLFDNYIVELER.K..ERE.K
  591-  653 (90.92/59.24)	RQKMA..EYRKFLET...CDYIKASTQWRKIQD.....RLEDDERCSCL......E...KI..D.RLIGFEDYINDLEK.E..EEElK
  663-  732 (70.90/44.34)	AERKNRDAFRTLLEEhvaAGILTAKTYWLEYCI.....EVRDLPQYQAVasnlsgS...TP.K....DLFEDITEELDK.Q..YHE..
  734-  791 (26.16/11.05)	...KSR...VK............DAMK.SRKVSmvsswMFED...FKSA...lseDlssQPvSDiNLKLIYNDLVE..RmK..EKE.E
  797-  853 (70.17/43.80)	FQRLA.EEFTNLLRT...FKEINAASNWEDVKQ.....LVEESQEYRSI......G...DD.NV.SRGLFEEYITSL...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     127.37|      28|      30|     132|     159|       4
---------------------------------------------------------------------------
  126-  153 (58.48/37.21)	V......PGQQG..QQFVPAA..SQQPF..HHPYGHV....PPN
  154-  180 (40.11/23.08)	V......QSQFS..QQLFPVR..PGQP.......GHIasssPPV
  181-  219 (28.78/14.36)	VgfgtsgPPPFSssYSFTPSSygQQQPTpqMHASGSV....PP.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.73|      15|      30|      37|      55|       5
---------------------------------------------------------------------------
   40-   55 (26.75/21.73)	RLLPELAGFSpHISDR
   72-   86 (31.99/12.92)	HPMPELAGFS.HRGRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.03|      27|      30|     358|     386|       6
---------------------------------------------------------------------------
  358-  386 (41.67/35.19)	ASSSDLAVstPVTAVVPSTSSTIPGHSTS
  387-  413 (49.35/34.80)	PIPAGLAV..PVTRPPPVASVTPTFAATS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31088 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KAKEKERKRDEEKSRKEKDKEEKEKRKDKEKERREKEREREKERSSKREESDGDVDVSEGQKEEKRKGKDRDRKHRRRHHNSDDDVSSDRDDREESKKSSSRKHGNDRKKSRKHANTPESDSESRHKRQKKEQRESSRRGGNDELEDGEVGEDGVVSMISGYTLCKSSGCDKSENEPDAASILEQEGTMIQR
2) SSSYSFTPSSYGQQQPTPQMHASGSVPPAANSWPAPPVIQSTTLVSPVQQTPATPTDPGNLTPQSASDWM
3) VQSQFSQQLFPVRPGQPGHIASSSPPVVGFGTSGPP
856
192
154
1047
261
189










Molecular Recognition Features






MoRF SequenceStartStop




NANANA