<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31076

Description ATP-dependent DNA helicase
SequenceMESEAIQDELQSLELEINDVQGQISALIEHQDRLYERKSELKTLLKAVSASVTPVAPSCPDGSSAVENWSEPFEWDSRADDIRFNIFGISKYRANQREIVNVIMAGRDVLVIMAAGGGKSLCYQLPAILRGGTTLVVSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPEKVSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPKVPMVALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKSLVGKAVVDEIAEFIRESYSNNESGIVYCFSRKECEQIAGELRERGISADYYHAEMDVNMREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECVLFFRSGDVPRQSSMVFYEYSGLQNLYDIVRYCQSKTKCRGSAFFRHFGEPSQDCNGMCDNCALSSEVKEVDVSDLAKLVVSMVQEMQAKDQRVTMLQLGDKLRTKHKDLSAELKREEIEHLVIKLIVDSVLKEEFQHTPYSTNAYVTTGPLANQLLQGRKTIKTETSSRQINKKSKRSSSFSGLESKLDELRKEISAAHGSMLPHTVLSTQQIGLISSQKPDSLQELESIIGKLKTDKYGDKILEVMRHDTVSEQLVEDGTKEDTCKSRSSKRAKTQKNVVLLESSEEE
Length705
PositionUnknown
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.396
Instability index42.13
Isoelectric point6.78
Molecular weight79253.64
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31076
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.48|      23|      24|     288|     310|       1
---------------------------------------------------------------------------
  288-  310 (37.10/20.60)	YSVREKSLV...GKAVVDEIAEFIRE
  312-  337 (34.38/18.66)	YSNNESGIVycfSRKECEQIAGELRE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     143.22|      44|     300|     239|     285|       2
---------------------------------------------------------------------------
  239-  285 (69.68/54.05)	SILKTQFPKVPMVALTATATQKVQNdliEMLHIPKCVKFVSSVNRPN
  545-  588 (73.53/49.11)	SVLKEEFQHTPYSTNAYVTTGPLAN...QLLQGRKTIKTETSSRQIN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.01|      20|      22|       7|      26|       4
---------------------------------------------------------------------------
    7-   26 (31.29/18.29)	QDELQSLELEINDVQGQISA
   31-   50 (30.28/17.48)	QDRLYERKSELKTLLKAVSA
  637-  650 (16.44/ 6.40)	PDSLQELESIIGKL......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.43|      10|      38|     418|     427|       7
---------------------------------------------------------------------------
  418-  427 (20.17/13.25)	FFRSGDVPRQ
  459-  468 (21.26/14.36)	FFRHFGEPSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.53|      15|      29|     349|     363|       8
---------------------------------------------------------------------------
  349-  363 (29.51/21.34)	MDVN...MREKVHMRWSK
  377-  394 (22.03/14.15)	MGINkpdVRFVIHHSLSK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31076 with Med34 domain of Kingdom Viridiplantae
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