<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31072

Description Uncharacterized protein
SequenceMQRRPPPLTPYKLKCEKDGLNSRLGPPDFHPPTATSPEENLTKEYAQSGYKETVDGLKEADEIILTHFHTFSKPVVIKCKEAVRKCFRAINESRALKRKAGQVYGVPLSGSLLCKPGFPELRSCGEETKKKWIEVTYRYAYLTILFWFMFVAVHLSLSQQHKRLRSLADNIPGYKRKTLFEVLIRNNVPLPRATWFIKVTYLNQVRPSSGSILSGAPDKTQITRCEQWTKDVVDYLQYLLDELLSRNNSYPSQQTRDRSPQMLYTGSIQKISPASASLYGEETSLHFKWWYMVRLLQWHLAEGLLLPNLIVDWVLRLLQEKEIFETLQLLLPIVYGVLESIVLSQTYVQNLVAIAVRFIQEPAPGGSDLVDNSRRAYTLSALTEMIRYLVLAAPDTFVASDCFPLPPSIAACGPNDVSYASKAYENLEKLRSNSAEISTQFQGRGVDSRFEFLSFDYTISTVQRSADDLAKIASAGYPQHNGAKAVQALDKALSDGDIRAAYGYLFKDLCNGAVEETWIAEVSPCLRTSLRWIGAISASFVCSVFFLIEWATCDFRDFRDRVPKDIKFSGRRDCSPVHLVIQLLKQKSLGGEFAARRGQNHRSNFLGVSKPSGSMDAFESPGPLHDIIVCWIDQHEVHRGGAKRLQLLVFELIRSGIFNPVAYVRQLILSGMIDVIQPAVDLERRMRHHRILKQLPGCFVHATLEEAQFLGGYKLSEAVRIYSNERRLLLRELLVGKGKHVNTLALSDQKSKKKSTSFPLVDLPRTFDAMGDSEGLRKHTKSSVDIRELKERIAALLQFPRMSCGVTSPVPDEFQSSVKGSIGSVYSKVDQLEATPGCEDCRKAKRPKMDDEKSSWSSSIISDEEDNWWIKKGLKTVEPSLKVDPPIELTKQVPRGRQKMARKTQSLAQLQATRIEGSQGTSTSHVCDSKVSCPHHGHGVEGENHWVVDVFRTSTPVDIVSVGNSLKQLQFVDKRSIAVWLTTVVRQLIEESEKSSVKVGQFNKAAPVEESRITRWKLGADELSAILFLMDLSLDLVLVAKFLLWLLPKGNSSPNFAIQGGRNLVIMPRDGENNTCEVAEAILVSSLRRYENILLSADLVPETMTALMARAASLMSSNGKISGSAALVYARYILKRYGSLPSVVEWHGNFKATCEKRLLSELDHTRPGNGEYGIPLGVPAGVDNPDEYLRKKITRPSRVGLTMREGVQRKVEEATQYLRKLMGTGTMKASSPAEKNDYGYQVAQQIVVGLMDCIRQTGGAAQEGDPSLVSSAVSAIINSIGISMAKNSDLSVHPSGVGSSNIARYVLQIHITCLCLLKEALGERQSRVFEIALATESSTALSGAFAPGKGSRSSQHQLSPESFDSNANITTNDMPNGSGKIPLSRATKVTAAVSALVIGAITHGVITLERIVGLLRLREYLDFVQFVRRTKSSSNGSARSVGASKMENPVEVYVHWFRLLVGNCKTVSEGLVLELVGESSVVAVSRMQRTLPLKLVFPPAYSILAFVLWRPFVSNGNSNSGVHDDTHRLYQSLTMAFHDVIKHLPFRDVCLRDTQGLYELIVADSTDAEFASVLELNGLDMHLKAVAFAPLRARLFLNSLIDCKVPSCGYSHEGGGVSEAAKNRHQGNGTSLVDKLVSVLDCLQPAKFHWQWIELRLLLNEQALTEKLENHDMPLTDAIRSSCPTSNEKSEASENEKNFIQILLTRLLVRPDAVPLFTEVVHLFGRSVEDSMLKQAEWFLAGQDVLFGRKTIRQKLIIVGESKGLPTKPQFWKPWGWCNNSSSDPITGNMAAAGKKRKLETVTSMEEGEVIEEGLGSKKLLLDEKNRLCFGVTTERAFVKLVLPCIDQSSDESRSTFVNELVKQFSNIEQQVSSVTNRITKHMGTASSGSTEVSSSKGSTRKGLRGGSPSLARRSATTNTTDTVPPPPPSPAALRSSMSLRLHFLLRLLPVICREPSFRNTRHTLASTIVRLLGSRVVYEDSSPRNDLSKSETESTTDPSSMADLSNEVLFDRLLFVLHGLLSNHQPNWLKPRSSSSNESSKDFTLFDRDAAESLQNELSRMHLPDTIRWRIQAAMPTLLPSLRCSLSCQPHSVPPTALTLVQPSGSAAAGLNQRNSPAIPKTVTAAGQGKLKQTMLSQSQQQQEAENTDVVVDPWTLLEDGTSSGPSSSNPLNNSNMGNVRATCWLKGAVRVRRTDLTYIGSVDEDS
Length2208
PositionKinase
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.244
Instability index46.45
Isoelectric point8.91
Molecular weight244648.01
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31072
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.15|      16|     877|    1041|    1056|       1
---------------------------------------------------------------------------
 1041- 1056 (31.75/18.74)	KFLLWLLPKGNSSPNF
 1943- 1958 (31.40/18.44)	HFLLRLLPVICREPSF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.48|      24|      26|    1165|    1190|       3
---------------------------------------------------------------------------
 1165- 1190 (41.43/26.37)	TRPgnGEYGIPL..GVPAGVDNPDEYLR
 1194- 1219 (38.06/18.28)	TRP..SRVGLTMreGVQRKVEEATQYLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     163.90|      51|     384|     118|     172|       4
---------------------------------------------------------------------------
  118-  172 (82.90/66.49)	FPELrsCGEETKKKWI.EVTyrYAYLTILFWF.....MFV.AVHLSLSQQHKRLRSLADNIP
  506-  563 (80.99/52.05)	FKDL..CNGAVEETWIaEVS..PCLRTSLRWIgaisaSFVcSVFFLIEWATCDFRDFRDRVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.12|      16|     384|    1223|    1255|       5
---------------------------------------------------------------------------
  265-  280 (28.36/ 6.69)	TGSIQKISPASASLYG
 1224- 1239 (29.76/39.28)	TGTMKASSPAEKNDYG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     150.17|      44|     876|    1295|    1338|       7
---------------------------------------------------------------------------
 1295- 1338 (72.89/56.93)	SGVGSSNIARYVLQIHITCLCLLKEALGERQSRVFEIALATESS
 2165- 2208 (77.29/60.95)	SGPSSSNPLNNSNMGNVRATCWLKGAVRVRRTDLTYIGSVDEDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.34|      21|      70|    1764|    1784|      10
---------------------------------------------------------------------------
 1764- 1784 (46.06/27.66)	GLPTKPQFWKPWGWCNNSSSD
 1831- 1851 (37.28/20.94)	GVTTERAFVKLVLPCIDQSSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     140.18|      43|     876|     750|     822|      13
---------------------------------------------------------------------------
  615-  661 (69.94/32.15)	MDAF.ESPGpLHDIIVCWIDQHEVHRGGAKRLQllvFELIRSGIFNPV
  767-  810 (70.24/57.75)	FDAMgDSEG.LRKHTKSSVDIRELKERIAALLQ...FPRMSCGVTSPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.85|      24|      78|    1600|    1623|      15
---------------------------------------------------------------------------
 1600- 1623 (45.06/31.32)	LIDCKVPSCGYSHEGGGVSEAAKN
 1675- 1698 (41.79/28.41)	LTDAIRSSCPTSNEKSEASENEKN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.44|      37|     971|     888|     924|      17
---------------------------------------------------------------------------
  888-  924 (60.60/39.35)	ELTKQVPRGRQKMARKTQSLAQLQATRIEGSQGTSTS
 1860- 1896 (59.83/38.74)	ELVKQFSNIEQQVSSVTNRITKHMGTASSGSTEVSSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31072 with Med12 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PPIELTKQVPRGRQKMARKTQSLAQLQATRI
2) PTALTLVQPSGSAAAGLNQRNSPAIPKTVTAAGQGKLKQTMLSQSQQQQEAENTDVVVDPWTLLEDGTSSGPSSSNPLNNSNMG
3) TNRITKHMGTASSGSTEVSSSKGSTRKGLRGGSPSLARRSATTNTTDTVPPPPPSPAALRS
885
2096
1876
915
2179
1936










Molecular Recognition Features






MoRF SequenceStartStop




1) PLTPYKLKCEKDGLN
7
21