<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31065

Description Uncharacterized protein
SequenceMSLSEVQKPKAPQTNWSEHVKVLDGSPSSVTKHLSSNFLYALESQKPGRCRDMAARSIAFPSVNVHTLAHPQIAKAWRALSSLSINKTYLRPGITPPVDDSGTNGSYSARESSTVKVTSSTGGSFYSNNQQNQSQMGVPGTGRYSHSFPSSVPGDDKRAAEKFSRVNDEVREPETSCAHSNGVEKPFRKSALAAEQLESGEACLDEINDDILQNIDVDQILMEHYQSTSTPQPSVSSFPLRTPPVDRSASSREEEFCLPPELCCNCSHGIKLGLCPEASTHLEQMKNTLIAISNELLDDDTDLSPDRIQELRQERLQLKKQIQQLENHIRDKERETSKFLSSTATPFQYETPKATNRNMDDPQTDSRAEFSEQGGYASGSWNMPRDSSFSVDRYGLSSAPVEREQYVPRIIDVKYTEGSSDKKWSSREFSWTKKLEVSNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICQGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLKIFQELSSEHSKYKLLYVTPEKVAQSDSLLRHLDSLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLKEFGHKAAFYHGSIEPTQRALVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRASCVLYYGYGDYIRVKHMISQGGVDQSPMAGGYNRVASSARLLETNSENLHRMLRYCENEVDCRRFLQLVHFGEKFDSTNCKNTCDNCCSSQSLIDKDVTLITRQLVELVKQTGERFSSSHILEVYRGSLNQMVKKHRHETLQFHGAGKQLSKIEVSRILHYLVTEDILVEDVRKSDMYGSVSSLLKVNNAKAASLFSGSQTIMMRFPSSVKVLKTTKPAPTPAKAPVTSADTPPEDLNLSAIMYTALRKLRTLLVKEAPDGVMAYHIFGNATLQQISKKIPRTKEELLEINGLGKAKVTKYGDRLLETIESTVNEYYGTSNKDSMISPDTGKRRRDENTSPNVADDDDDFAEMSIQSCKKTARNKSNEIGMVVEKLDFDFEDEDGSELRPEGRVLPW
Length1162
PositionUnknown
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.520
Instability index48.75
Isoelectric point6.61
Molecular weight130036.37
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31065
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     446.21|     128|     144|     770|     913|       1
---------------------------------------------------------------------------
  673-  810 (139.36/133.02)	.........YCLSRMDCEKVAeKLKEFGHKaaFYHGSIEPT......QRALVQKqwskdeiNIICAT..VAFGM.GINKPDVRF.......VIHHSLPKSIEG...YHQECGRAGRDGQrascvlyygygdyiRVKH.MISQG....GVDQSPMaggYNRVASsarLLETN
  811-  953 (195.63/151.18)	SENLhrMLRYCENEVDCRRFL.QLVHFGEK..FDSTNCKNTCDNCCSSQSLIDK.......DVTLIT..RQLVE.LVKQTGERFSSSHILEVYRGSLNQMVKK...HRHETLQFHGAGK......qlskievsRILHyLVTEDilveDVRKSDM...YGSVSS...LLKVN
  964- 1060 (111.22/73.58)	SQTI..MMRF.PSSVKVLK........TTK..PAPTPAKAPVTSADTPPEDLNL.......SAIMYTalRKLRTlLVKEAPDGVMAYHIFG..NATLQQISKKiprTKEELLEINGLGK....................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.50|      30|     144|     225|     259|       2
---------------------------------------------------------------------------
  225-  259 (51.59/41.28)	YQSTSTPQPSVSSFplrtpPVDR...SASSREEEFCLP
  376-  408 (52.91/29.83)	YASGSWNMPRDSSF.....SVDRyglSSAPVEREQYVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.10|      47|     142|     437|     492|       3
---------------------------------------------------------------------------
  437-  492 (68.66/64.12)	VSNkkvFGnHSFRPNQRE..IINATMSGSDVFVLMPTGggkslTYQLPALICQGITLV
  580-  628 (76.44/47.27)	VSQ...WG.HDFRPDYQSlgILKQKFPNIPVLALTATA.....TASVKEDVVQALGLV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31065 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSSTATPFQYETPKATNRNMDDPQTDSRAEFSEQGGYA
2) TSSTGGSFYSNNQQNQSQMGVPGTGRYSHSFPSSVPGDDKRAAEKFSRVNDEVREPETSCAHSNGVEK
3) YGTSNKDSMISPDTGKRRRDENTSPNVADDDDDFAEMSIQSCK
340
118
1082
377
185
1124










Molecular Recognition Features






MoRF SequenceStartStop




1) ELRPEGRVLPW
1152
1162