<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31064

Description Uncharacterized protein
SequenceMCLDGLIGSNTQLFFNWLIFDEYMCLWRLMFMNRAVFMSSVAIEGEEEKLGTVIGIDLGTTYSCVGVYHNNHVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAAKNPEGTIFDPKRLMGRKFDDPDVQRDIKFLPYKVVNKDGKPYIQVKVKGEVKVFSPEEISAMILSKMKETAEAFLGKKIKDAVITVPAYFNDAQRQATKDAGAIAGLNVVRIINEPTGAAIAYGLDKKGGETNILVYDLGGGTFDVSILTIDNGVFEVLSTSGDTHLGGEDFDHRVMDYFIKLIKKKYNKDISKDHKALGKLRRECERAKRALSNQHQVRVEIESLFDGADFSEPLTKARFEELNMDLFKKTMEPVKKALKDAGLKKSEIDEIVLVGGSTRIPKVQEMLKDFFDGKEPNKGTNPDEAVAYGAAVQGGVLSGEGGEETQNILLLDVAPLSLGIETVGGVMTKVIPRNTAIPTKKSQVFTTYQDQQTTVSIKVYEGERSMTKDNRELGKFDLTGILPAPRGVAQIEVTFEVDANGILQVKAEDKVAKTSQSITITNDKGRLTQEEIDEMIREAEEFAEEDRIVKEKIDAKNKLETYVYNMKSSLEKLAEKISYEDKAKMEVVLKEALEWLEENVNAEKDDYEEKLKEVESVCNPVIKSVYEKTSGESEEDEEVGDDEL
Length673
PositionUnknown
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.415
Instability index33.10
Isoelectric point4.93
Molecular weight75073.47
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IBA:GO_Central
endoplasmic reticulum chaperone complex	GO:0034663	IBA:GO_Central
endoplasmic reticulum lumen	GO:0005788	IBA:GO_Central
membrane	GO:0016020	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IBA:GO_Central
ATPase activity	GO:0016887	IBA:GO_Central
heat shock protein binding	GO:0031072	IBA:GO_Central
misfolded protein binding	GO:0051787	IBA:GO_Central
protein folding chaperone	GO:0044183	IBA:GO_Central
unfolded protein binding	GO:0051082	IBA:GO_Central

GO - Biological Process
cellular response to unfolded protein	GO:0034620	IBA:GO_Central
chaperone cofactor-dependent protein refolding	GO:0051085	IBA:GO_Central
endoplasmic reticulum unfolded protein response	GO:0030968	IBA:GO_Central
protein refolding	GO:0042026	IBA:GO_Central
ubiquitin-dependent ERAD pathway	GO:0030433	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31064
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.09|      23|      27|     603|     627|       1
---------------------------------------------------------------------------
  603-  625 (39.05/26.11)	AEKISYEDKAK.MEVVLKEALEWL
  631-  654 (29.03/11.70)	AEKDDYEEKLKeVESVCNPVIKSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.18|      15|      20|       1|      15|       2
---------------------------------------------------------------------------
    1-   15 (28.70/21.52)	MCLDGLIGSNTQLFF
   24-   38 (31.48/24.27)	MCLWRLMFMNRAVFM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.66|      14|      20|     506|     519|       3
---------------------------------------------------------------------------
  506-  519 (25.60/19.04)	DLTGILP..APRGVAQ
  527-  542 (19.06/12.21)	DANGILQvkAEDKVAK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.08|      21|      21|     115|     135|       4
---------------------------------------------------------------------------
   91-  114 (22.89/10.48)	FtDTERLI...GEaaKNQAAKNPEGTI
  115-  135 (36.15/20.37)	F.DPKRLM...GR..KFDDPDVQRDIK
  136-  159 (27.04/13.57)	F.LPYKVVnkdGK..PYIQVKVKGEVK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.46|      11|      19|     552|     562|       6
---------------------------------------------------------------------------
  552-  562 (18.59/11.33)	DKGRLTQEEID
  573-  583 (17.87/10.60)	EEDRIVKEKID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.20|      15|      19|     439|     457|       9
---------------------------------------------------------------------------
  423-  451 (16.35/14.86)	GGVLSgeggeetqnillldVAPLSLGIET
  453-  468 (23.85/10.64)	GGVMT.............kVIPRNTAIPT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31064 with Med37 domain of Kingdom Viridiplantae
Unable to open file!