<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31057

Description Uncharacterized protein
SequenceMNQPQVSLGNSTGGDAKEEEEEEEEEVNQHQLEEEEEAESRDQIVVEEKSDDQMEVDPVSPATVFCVTLKQPNSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSKAIPPFWIPIHILIPERPTECAVFNVVADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPTQGAANLVHDATSWQCEHEWRQDIAVVTKWLTGASPFTALAYPGKFILIVFSSFENQYKWLSSNSKTSSGTNAKSTFEEKFLSQSSESSARWPNFLCVCSVFSSGSVQLHWSQWPSNQGGTAPKWFSTKKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNVLQATPKISTGSHVPPSLSSSAWTGFAPLAAYLFNWQEYLISEINKGKKPTDQESSDAISLSCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWKVQRWESSVQPVVLHQIFGNPTSNFGGQVPTQTVWVSRVDLSIPPTNDFKNHQTAVAGPSVDAQKEPDSGDDKANKVVFDPFDLPSDIRTLARIVYSAHGGEIAVAFLRGGVHIFSGPTFSPVENYQINVGSAIAAPAFSPTSCCSASVWHDAAKDCAMLNIIRVLPPALPPNQSKVDQSMWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLTSVIAVMDADFHSLPSTQHRQQYGPNLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVIEPWRTDGETILSTDPEALAVDPALVSSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAASTGTGSNRNMVASPTQNASSPATTQAVPDKSVNHGPGQPTATTSTTNPSGSTQMQAWMQGAIAKFSSSNDGVSNSTASPVSGSATFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCYFQRLQASRNHQKNADASSQKLQTGATSKSEEVNSAKPNPALNRMEEAQGFRTSQLGAGVKGIDDNSARTTKMGSGNAGQGYTFEEVRVLFHILMDLCKRTAALPHPLPGSQVGSGNIQVRLHYIDGNYTVLPEVVEAALGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNLFGGPGTDPEDAVPSDDTFFTQGHSLDVYDRVQSLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTATWKTGLEGVWYKCIRCLRQTSAFASPGASKQPNPNEREAWWTSRWVYCCPMCGGTWAMIAPVESSMVMV
Length1277
PositionTail
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.08
Grand average of hydropathy-0.222
Instability index45.69
Isoelectric point5.51
Molecular weight138194.85
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31057
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.28|      11|      16|    1011|    1021|       1
---------------------------------------------------------------------------
 1011- 1021 (19.59/12.38)	RTSQLGAGVKG
 1028- 1038 (20.69/13.53)	RTTKMGSGNAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.26|      17|      17|     802|     818|       2
---------------------------------------------------------------------------
  802-  818 (27.25/18.73)	VSSIQAYVDAVLDLASH
  820-  836 (30.01/21.38)	ITRLRRYASFCRTLASH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.64|      15|      19|     230|     246|       3
---------------------------------------------------------------------------
  230-  246 (23.25/22.53)	SSFENqyKWLSSNSKTS
  253-  267 (26.39/16.84)	STFEE..KFLSQSSESS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.47|      18|     207|     284|     301|       5
---------------------------------------------------------------------------
  284-  301 (38.93/17.58)	SVQ...LH..WSQWPSNQGGTAP
  492-  514 (26.54/10.00)	SVQpvvLHqiFGNPTSNFGGQVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     254.77|      83|     532|     305|     418|       6
---------------------------------------------------------------------------
  320-  418 (122.83/109.09)	AADAIITDSGAMHVAGVPIVNPSTivvweVTPGPGNVLQA..TPKISTGSHVPPSLSSSAWTGFAPLAAYLfnwqeyLISeINKGKKPtdqeSSDAISL..SC
  860-  946 (131.94/61.51)	ATTQAVPDKSVNHGPGQPTATTST.....TNPSGSTQMQAwmQGAIAKFSSSNDGVSNSTASPVSGSATFM......PIS.INTGTFP....GTPAVRLigDC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.33|      27|     532|     668|     695|       7
---------------------------------------------------------------------------
  668-  695 (48.17/34.08)	RAIAERFWWSLLVGVdWWDAVGC.TQSAA
 1203- 1230 (47.16/28.39)	RDVVTATWKTGLEGV.WYKCIRClRQTSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.69|      35|     531|     568|     606|       8
---------------------------------------------------------------------------
  568-  606 (57.03/37.45)	LPSDIRTLARivysAHGGEIAVAFLRG.GVH..........IFSGPTFSP
 1099- 1144 (53.66/27.18)	LGPHMQNMPR....PRGADAAGLLLRElELHppseewhrrnLFGGPGTDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.58|      34|     531|      89|     123|      10
---------------------------------------------------------------------------
   89-  123 (58.12/42.49)	FSAVAwCGKLNAIACASETCARIPSSKAIPPFWIP
  623-  656 (64.46/41.08)	FSPTS.CCSASVWHDAAKDCAMLNIIRVLPPALPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.32|      14|      15|     166|     180|      12
---------------------------------------------------------------------------
  155-  175 (21.27/11.38)	S.PTScpralliANFHGRITIW
  176-  192 (18.04/14.12)	TqPTQ.....gaANLVHDATSW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31057 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HQKNADASSQKLQTGATSKSEEVNSAKPNPALNRMEEAQG
2) MNQPQVSLGNSTGGDAKEEEEEEEEEVNQHQLEEEEEAESRDQIVVEEKSDDQ
3) TGTGSNRNMVASPTQNASSPATTQAVPDKSVNHGPGQPTATTSTTNPSGSTQ
970
1
840
1009
53
891










Molecular Recognition Features






MoRF SequenceStartStop




NANANA