<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31054

Description Uncharacterized protein
SequenceMEGKKPARSLSEHLSLPPTPSPAVAVAINGKKKSKYVAFWALEKFIPEGFSDFKLIYVRPPVTYIPTPMGNAISISELRADVVSAYRQEVDWNTNETLRPYKKMFERRKVRVEILVLESHDPVAAIAEEIAGTRVTKLVIGMSLRGFFSRKIDMSSMIATAVPRFCTVYVVSKGKLASVRPSDSDASGTIRIERIERDSFTSGSTDSPSPRVPSDYQDFLSFVSEAQSRVSHFLPPAKHSEVGSSAVVQMDTSSSETDQSEVSTGRAMQIVPSGGNEEKKSNTSNESFSASFPMGAEAYHAMSFASKWRDHEDRRSIMSSSSSNNHDITNMDWGAVVPENYSFVSHQASNMSEGLLSVHSVTNNNQVNLNFEIEKLRAELKHVQEMYAMAQTETVDASQKLTELNQRKHEESEKLMELKEKEELAKDTASKEKQRYEETMKEAEKVKERMMKEALRRREAEIKAECDAKEKDKLQASLVSPGIQYQHYSWEEIAAATSDFSEDLKIGMGAYGTVYKCNLHHTTGAVKVLHAGETQLSKQFDQELEILSKIRHPHLVLLLGACPERGCLVYEYMDNGSLDDRLMQANDTPAIPWFERFRIALEVASALVFLHKSKPRPIIHRDLKPGNILLDHNFVSKLGDVGLSTMVNQDDAASKLTVFKKTSPVGTLCYIDPEYQRTGIISPKSDVYSLGIVILQLITGKPAIAITHVVEEAIGDDAEFMALLDMKAGPWPISETRELAALGLCCTELRRRDRPDLKDQIIPALERLRKVVDKAQNLIGRTPSGPPSHFICPLLKGVMNEPCVAADGYTYDREAIQDWLRENDTSPVTNLPLPNKNLLANYTLYSAIMEWKSNK
Length855
PositionTail
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.417
Instability index43.01
Isoelectric point6.12
Molecular weight95591.66
Publications
PubMed=21873998

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31054
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.52|      26|      37|     399|     435|       1
---------------------------------------------------------------------------
  410-  435 (41.42/48.84)	EES........EKLME..LKEKE.ELAKDTASKEKQR
  437-  473 (28.10/10.21)	EETmkeaekvkERMMKeaLRRREaEIKAECDAKEKDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.44|      19|      19|     182|     200|       2
---------------------------------------------------------------------------
  182-  200 (32.55/19.92)	SDSDASGTIRIERIERD..SF
  202-  222 (30.89/18.53)	SGSTDSPSPRVPSDYQDflSF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.70|      18|      18|     259|     276|       4
---------------------------------------------------------------------------
  239-  256 (26.27/14.93)	HSEVGSSAVVQMDTSSSE
  259-  276 (29.14/17.37)	QSEVSTGRAMQIVPSGGN
  280-  297 (27.29/15.80)	KSNTSNESFSASFPMGAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.45|      20|      37|     303|     328|       5
---------------------------------------------------------------------------
  303-  328 (26.44/30.96)	SFASkwrdHEdrRSIMSS......SSSNNHDI
  342-  367 (30.01/15.96)	SFVS....HQ..ASNMSEgllsvhSVTNNNQV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31054 with Med32 domain of Kingdom Viridiplantae
Unable to open file!