<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31052

Description Uncharacterized protein
SequenceMKPPASLDHWRDYFRRADSDIFQIIDHAIMVAAADSPIKFKTKRDKIAELLFSCRVARCNGCDHLELSVPGEDTAVGGGGGSKESNKQIVGNNYSYEDDEAEALSDAIEEFSLVSKEVVRIKEVLINKDHETHEVIIESLRKLKLMSLDVDILKSTEIGKAVNGLRKHGSDQIRQLAKTLIAEWKELVDQWVNTTKDIAGGTPESANPSVVDEEEEEGAFPSLPYDVDIFTPEANGFEMLNGDFFDSLDFDGNPCDSGEYNTSREHERRKTQKRRPEGGIQMKIHDASFRSIKPSSLADRTRRPLKQEQKRKATGPQQEKLKGLGADAKFEFAKRKLQESYQHHENAKKQRTIQVLETIPKQGGAAQKPQLKRPGMNNRNWSNGRK
Length386
PositionUnknown
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.830
Instability index44.11
Isoelectric point6.41
Molecular weight43486.32
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31052
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     112.70|      42|      72|      82|     124|       1
---------------------------------------------------------------------------
   82-  107 (25.04/18.58)	................................................SKES.NKQIVGnNYSYEDDEAEALSDA
  108-  179 (47.44/31.90)	IEEFS.LVSKEVVRIKEVlinkdhetheviieslrklklmsldvdilkSTEI.GKAVNG.LRKHGSDQIRQLAKT
  181-  220 (40.22/25.91)	IAEWKeLVDQWVNTTKDI...........................aggTPESaNPSVVD.....EEEEEGAF...
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31052 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) CDSGEYNTSREHERRKTQKRRPEGGIQMKIHDASFRSIKPSSLADRTRRPLKQEQKRKATGPQQEKLKGLGADAK
2) FAKRKLQESYQHHENAKKQRTIQVLETIPKQGGAAQKPQLKRPGMNNRNWSNGRK
255
332
329
386










Molecular Recognition Features






MoRF SequenceStartStop




1) AAQKPQLKRPGMNNRNWSN
2) IQVLETIPKQ
3) WRDYFR
365
353
10
383
362
15