<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31049

Description Uncharacterized protein
SequenceMYGEITNSRKPKFSGLAKTLKGINGSTWHDTFLGIWIAALRLVQRDPIEGPIPRLDTRLCMSLCIVPLVVATLIEEGESEFVMKKLRDHLITSLQALGEFPGLLAPPQCVVSAANKATTKAIMFLSGGDVGKSCSDVMNMKNMPINCCGNMRHLIIEACIARNILDTSAYSWPGYANGRINQIPQSLSSEAPCWSSFVKGAQLNAAMGHGFDGSLSELEKLYEVAVKGSDDERISAAVVLCGASLTRGWNIQEHTVEYLTRLLSPPVPADYSGAESHLIGYACMLNVVIVPQLACSLMPICEVFGSYTPSVSWTLPSGEEISAYSVFSNAFTLLLKLWRFNHPPIGSQLTPEHLLSHLVTPETLNKDRNRKRLSEVARAASCEPVFVDSFPKLKIWYRQHQRCIASTLSGLAHGTPIHQTVEALLNMVYRKVKGSQTLNPVNSSGTSSSSGAASEDSVPRPEVPAWDTLKAVPYVVDAALTACSHGRLCPRDLATGLSERFNRFSAEVRRGVWKPVFMNGIDWPNPAANLSNVEEYIKKILATTGVDIPSLAPAGGSSPAALPLPLAAFVSLTITYKVDKASERFLNLAGTALECLAAGCPWLCIPIVASLWTQKAKRWFDFLVFSASCTVFLHNPDAVVQLLRNCYSATLGLNANDGGVEALLGHGGISPVAPGILYFRMYRALRDTVSVTEEIFSLLIHSVEDIAQNRLSKENLERLKTAKTRPKLTSNRNDSSQACCSLSASLVWLTGVRPITRRTIGASGRAMRAYALAYFVVLCGAIAWGVDSRSAASKRRQGIMGSHLEFLASTLDGKISVGCETATWRTYITGLVIEIDAEVLKSLSNGLRQWGKDELAILLISMGGIETMVHATNFIIHLNAS
Length881
PositionTail
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy0.095
Instability index40.71
Isoelectric point8.52
Molecular weight95657.37
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31049
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.23|      12|     537|     238|     252|       1
---------------------------------------------------------------------------
  238-  252 (19.83/16.82)	VVLCGASltrGWNIQ
  776-  787 (24.40/12.33)	VVLCGAI...AWGVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     169.28|      53|     445|      94|     147|       4
---------------------------------------------------------------------------
   94-  147 (90.13/62.16)	LQALG.EFPGlLAPPQCVVSAANKATTKAIMFLS.GGDVGKSCSDVMNMKNMPINC
  541-  595 (79.15/49.84)	LATTGvDIPS.LAPAGGSSPAALPLPLAAFVSLTiTYKVDKASERFLNLAGTALEC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      64.86|      23|     209|     379|     402|       6
---------------------------------------------------------------------------
  328-  386 (19.04/12.73)	SNAFTlLLKLWRFNHPPigsqltpehllshlvtpetlnkdrnrkrlsevarAASCePVF
  387-  402 (22.81/10.82)	VDSFP.KLKIWYRQHQR..........................................
  609-  632 (23.01/11.32)	AS.......LWTQKAKR...........................wfdflvfSASC.TVF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31049 with Med33 domain of Kingdom Viridiplantae
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