<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31047

Description Uncharacterized protein
SequenceMVVVTRDDRLAGALPHVQPMSAANKMCGSHLPEAQKSRVHLPQTNWLKHANAFECIPSSNNFLSSSMLYSLESQKPSRSRETASRPIYNIIPVDVQTLAHQHISKAWCALANLSINNTYLRPGITPAIDDINTNCSFSTRGRSTAKVTSNTDGSFFAHNHQEDSQKRIRGTATSFDRFSSSSPGDGKLISGKVPRVYNEVRDSVTGCINGMEVPPIRNLAHPARQVEVIEIDDDDILKSIDVEKIVMEHYHSTCTHQPSVNIFASRGEENPCLPPELCSNYSHGVKLGLCLQAPSHVEQMKDALLAVSNELLDDSTDLSPGHFEQLCQERLLLKKQIQQLEILIQDKEKKSSGCLASRPTRNIQYETPQTTNRKADYAHADSRVHVTEQGRYVSDNWNMPRDYLCSEDRSGLSSGPIERERCVPEIIDVTYTDGSNDKKWSSRDFPWTKNLEVNNKRVFGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALICAGITLVISPLVSLIQDQIMNLLQANIHAASLSAGMDWTQQLDILRELSSENSKYRLLYVTPEKVAKSDSLLRHLESLNSHSLLARFVIDEAHCVSQWGHDFRPDYQGLGILKKKFPKIPMLALTATATASVKEDVVQALGLVNTVVFRQSFNRPNLWYSVVPKTNKCLEDIDQFIKKNHFDECGIIYCLSKMDCEKVTETLRKFGHKAAFYHGSMDPGKRAFVQKKWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYYQECGRAGRDGQRSSCVLYYCYSDYIRVKHMISQGGPGQSTMTTGYNRIASSGRTLESNTDNLLRMVSYCENEVDCRRFLQLVHLGENFDSTNCKNTCDNCSSSKTLIEKDVTLIGRQLVELVKLTGERFSSAHIVELYRGSLNQTVKKHRHETLHLHGAGKHLSKSEASRILHYLVTKDILTEYVKKSDLYGSVSSLLKVNRSKAASILSGGQTIEMRFPSAVKAVKPSKQGPTPARVALKQTTLPMAPAPPQDSILSDTLVKALKNLRADIVKESSDAVMSYHIFGNPTLQQISKRLPRTKEELLDIHGLGKAKVSKYGDRLLETIESTINNHYGTNKNEGTGSGKRRRDENTNPIVVDNDDDDPDWTPSQQSYKKAYAVRGQTSEEAIC
Length1159
PositionUnknown
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.469
Instability index46.57
Isoelectric point8.57
Molecular weight129535.54
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31047
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.77|      24|      24|    1055|    1078|       1
---------------------------------------------------------------------------
 1055- 1078 (41.16/27.84)	GNPTLQQISKRLPRTKEELLDIH.G
 1080- 1104 (35.61/23.07)	GKAKVSKYGDRLLETIESTINNHyG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.55|      14|      24|     545|     559|       2
---------------------------------------------------------------------------
  545-  559 (19.87/14.76)	ILRELSSENSkYRLL
  572-  585 (24.68/13.78)	LLRHLESLNS.HSLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.42|      23|     152|     759|     787|       5
---------------------------------------------------------------------------
  755-  779 (36.47/33.82)	VIHHSLPKSIEgyYQECGRAGRDGQ
  784-  806 (42.95/20.87)	VLYYCYSDYIR..VKHMISQGGPGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.16|      10|      22|     496|     505|       7
---------------------------------------------------------------------------
  496-  505 (18.03/11.39)	QLPALICAGI
  519-  528 (17.13/10.47)	QIMNLLQANI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.92|      12|      23|     372|     383|      10
---------------------------------------------------------------------------
  372-  383 (21.28/11.81)	NRKADYAHADSR
  398-  409 (23.64/13.89)	NMPRDYLCSEDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.94|      31|     278|     431|     469|      11
---------------------------------------------------------------------------
  431-  469 (49.28/58.74)	YTDGSND........KKWSsrdfpwtKNlEVN...NKRVFGNHSFRPNQR
  712-  753 (47.66/32.65)	FYHGSMDpgkrafvqKKWS.......KD.EINiicATVAFGMGINKPDVR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31047 with Med34 domain of Kingdom Viridiplantae
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