<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31046

Description Uncharacterized protein
SequenceMDNNNWRPDLPNGDPSMDSGDWRSQLPPDSRQKIVNKIMETLKKHLPHSGTEGVNELRRIAARFEEKIFSGAVNQSDYLRKISMKMLTMDSKSQNPTGSSSSIPAANNVSSMDIKPNIQGHLLPGTLPNNQSQAPPQPLLSQPMQSNTASGMTGSTALTNNTNVTSVVNQNPSMQNVAGMLQDSSGQHGLSSNMFSGSSQRQMLGRPNAMSSQQQQQQQQPQSAQFLYQQQLQQQLLKQNFQSGNVQHIQQQQQPNLLQPNQMQQSGISTSTSAVSSSPLQGLHTNQQSSPQQSMLRQHQSSLLRQHPQSQQASGIHQQQTSLPQQQPISPLQQQQAQMMRQQAASGSGIQQKQMMGQNLVGDMQQQHQQRLLNQQNNILNMQQQKQQVPSQQQLMSQQNSLQTTHQQPLGTSHSNVTGLQQQQQQLLSNSSLQTNQQSVQHMLSQPTVGLQRAHQAGHGVFSSQGQQSQNQMIPLQSHHQQLGLQQQQPNLLQQDVQQRLQSSGQVTGSLLPPQSVVDQQRQQQLYQSQRTLPEMPSSSLDSTAQTESANGVDWQEEVYQKIQTMKEAYLPDLSEINQRVGAKLQQDASLPQQQRSEQFEKLKQFKNMLDRMIQFLSVPKINIMPALKDKVANYEKQIINFLNNHRPRRPLQQGQMQQQSGQNGQEQSHDSQANTQMQSMSMAGSVPRAQQSSLANMQNNVLSSRPGVSAPQQSIPASSLESGKGNAQVTMGSMQQNISQQVNNSSASAQSGLSTLQSNFNQAQLSSGLLQQQHLKQHQDQQMTQQFKQQFQQRQMQQLLQKQQLSQQQQQQLQARQQGAQFQQHSLQGQRGTYPLQQLKPGSQLPATSPQLLPGASPQMTQQHSSPQVDQKILMSSVNKMGTPLQPAHSPFVVPSPSTSLAPSPMQVESEKQPGAMGNTARQQQSVVQSIAIGTPGISASPLLQELTSPDGNNLNQSAAELPIERLIRVVKSISPQSLSSGVSDIRSVVSMVDRIAGSAPGNGSRTSVGEDLVAMTKCRLQARNLMTQEGMTASKKMKRNTTAMPLSVSSLGGSVGDNYKQFACSETSDLESTATSVGKKARTEKEHALLEEIKEINQRLIDTVVEISDDEDAADVSEGAIASKGCEGTTVRFSFKAVSLSPALKAHLSSTQMSPIQPLRLLVPCSYPRGSPSLLDNLPVETSKEKEDLSSKAMARFNILLRSLSQPMSLKDIAKTWEACARTVICEYAQQFGGGTFSSKYGTWEKFVAAS
Length1253
PositionTail
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.03
Grand average of hydropathy-0.774
Instability index72.94
Isoelectric point9.45
Molecular weight137750.43
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31046
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     833.55|      98|      98|     330|     427|       1
---------------------------------------------------------------------------
   94-  203 (70.40/13.01)	...........QNPTGSSSSipaanN........VSS.M........DIK.....pniQGHL.lpgtlpnnqsqAPPQ..P...L..LSQPMQSNTASGmtgstaltnntnvtSVVN....Q...N.PSM.QNV....AG...MLQDSSG...Q...HGLS..SNMFS....G...........................SSQRQM
  204-  296 (82.93/16.99)	..............LG..RP.....N........AMS.S........QQQ........QQQQ............QP........Q..SAQFLYQQQ...................LQ....Q.....QLLKQNFqsgnVQ...HIQQQQQ...P...NLL.QPN...Q....MQQsgiststsavsssplqglhtNQQSSPQQSML
  297-  395 (155.65/40.05)	RQHQSSLLRQHPQSQQAS..................G.I........HQQ........QTSL......pqqqpiSPLQ..Q...Q..QAQMMRQQAASG..............SGIQ....Q...K.QMMGQNL....VG...DMQQQHQ...Q...RLLNQQNNILN....MQQ....................QKQQVPSQQQL
  396-  488 (130.31/32.01)	MSQQNSLQTTHQQPLGTSHS.....N........VTG.L........QQQ........QQQL.........lsnSSLQtnQ...Q..SVQHMLSQPT................VGLQ....R...A.HQAGH.......G...VFSSQGQ...Q.......SQNQMIP....LQS....................HHQQLGLQQQ.
  489-  606 (81.56/16.55)	..QPNLLQQDVQQRLQSS.G.....Q........VTGsLlppqsvvdQQR........QQQLyqsqrtlpempsSSLD......S..TAQ...TESANG..............VDWQeevyQ...KiQTMKEAY....LP...DLSEINQ...RvgaKL..QQDASLP....QQQ....................RSEQFEKLKQF
  607-  721 (85.47/17.79)	...KNMLD.RMIQFLSVPKI.....NimpalkdkVAN.Y........EKQ........IINF.....lnnhrprRPLQ..QgqmQ..QQSGQNGQEQSH..............DSQA....N...T.QMQSMSM....AG...SVPRAQQ...S...SLANMQNNVLSsrpgVSA....................PQQSIPA.SSL
  722-  811 (89.10/18.94)	ESGKGNAQVT....MGSMQQ.....N........IS............QQvnnssasaQSGL............STLQ..S...NfnQA.....QLSSG..............L.LQ....QqhlK.QHQDQQM....TQ...QFKQQFQ...Q...R....Q.........MQQ..................llQKQQLSQQQQ.
  812-  875 (67.19/11.99)	..QQ..LQ.ARQQ.......................G.A........QFQ........QHSL......qgqrgtYPLQ..Q...L..K.........PG..............S..Q....L...P.ATSPQLL....PGaspQMTQQHS...S...........................................PQV.DQKIL
  876-  964 (70.94/13.18)	MSSVNKMGT....PLQPAHS.....P...................................F.vvpspstslapSPMQ..V...E..SE...KQPGAMG..............NTAR....Q...Q.QSVVQSI...aIG...TPGISASpllQ...ELTSPDGN..N....LNQ....................SAAELP.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.69|      19|      19|     965|     983|       7
---------------------------------------------------------------------------
  965-  983 (29.52/23.17)	IERLIRVVKSISPQSLSSG
  987- 1005 (31.16/25.01)	IRSVVSMVDRIAGSAPGNG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31046 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDNNNWRPDLPNGDPSMDSGDWRSQLPPDSRQKIVNKIMETLKKHLPHSGTEGVNELRRIA
2) QIINFLNNHRPRRPLQQGQMQQQSGQNGQEQSHDSQANTQMQSMSMAGSVPRAQQSSLANMQNNVLSSRPGVSAPQQSIPASSLESGKGNAQVTMGSMQQNISQQVNNSSASAQSGLSTLQSNFNQAQLSSGLLQQQHLKQHQDQQMTQQFKQQFQQ
3) QNFQSGNVQHIQQQQQPNLLQPNQMQQSGISTSTSAVSSSPLQGLHTNQQSSPQQSMLRQHQSSLLRQHPQSQQASGIHQQQTSLPQQQPISPLQQQQAQMMRQQAASGSGIQQKQMMGQNLVGDMQQQHQQRLLNQQNNILNMQQQKQQVPSQQQLMSQQNSLQTTHQQPLGTSHSNVTGLQQQQQQLLSNSSLQTNQQSVQHMLSQPTVGLQRAHQAGHGVFSSQGQQSQNQMIPLQSHHQQLGLQQQQPNLLQQDVQQR
4) QQLLQKQQLSQQQQQQLQARQQGAQFQQHSLQGQRGTYPLQQLKPGSQLPATSPQLLPGASPQMTQQHSSPQVDQKILMSSVNKMGTPLQPAHSPFVVPSPSTSLAPSPMQVESEKQPGAMGNTARQQQSVVQSIA
5) RKISMKMLTMDSKSQNPTGSSSSIPAANNVSSMDIKPNIQGHLLPGTLPNNQSQAPPQPLLSQPMQSNTASGMTGSTALTNNTNVTSVVNQNPSMQNVAGMLQDSSGQHGLSSNMFSGSSQRQMLGRPNAMSSQQQQQQQQPQSAQFLYQ
6) VDQQRQQQLYQSQRTLPEMPSSSLDSTAQTESANG
1
638
239
798
80
518
61
794
500
933
229
552










Molecular Recognition Features






MoRF SequenceStartStop




NANANA