<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31043

Description Uncharacterized protein
SequenceMDNNNWRLSIPNGESAAINNGEWRKQLPPDSRQKIVNKIMETLSRHLPSSGPEGINDLRRIAARFEEKTFSGAVNQSNTASGMAGSTGLPSSMQPVSSIANNNVTSVVNQNSSMQNVAGVLQDSSGQHGLSSNMISGSQRQMLGRPHIMSSQQQQQPQGGQYLYQQQLLRQNFQSGNVPNPIQQQQQNVLQPNQMHSSQQPGSTTSATQPSAVNSAPIQGLHTNQQSSPQFSSQQTTSQTILRQQQSSLLRQHPQSQQASGIHQQQTSLPHQSISPQQQAQMTRQQAASGSGIQQNQMMAQHVVGDMQQQQHQQRLLNQQNNVMNMRPQQKQHPPAQQQFMSQQNSLQATTQQPLGTKSNVAGLQQPQQQLLSSQTNQQSVHILSQPTAALQRTHQAGHGLYPSQGQQSQNQPSQQQMMPLQSHHQQLQQPNLLQQDVQQRLQSSGQVTGSLLPPQNVVDQQRQLYQSQRTLSEIPSSSLDSTAQKESGNAVDWQEEIKIMKDAYLPDVTEIYQRVIAKLQQMDSLPQQQRSEQFEKLRQFKTMLERMMQFLSVSKSSIMPPLKNKVAIYEKQIVDFVTAHRPRKPVQQGQPPQSQMQPMQQQSSQNGNHSHDGQANTQMQSMSMPRVQQSSLENAQYNVLSSRPLASAPQQNIPCSVPGSSLESGQGNALNNSQQVAMRSMQQNNYQEVNNSSASAQRSQLPVTSPQLLPGGSPQMTQQHLSPQVDQKNVISSVNKNGTPVQPANSPFVVPSPSTPLAPSPMQVASEKPSGASSLSMGNIARQQATGTQGVVQSIAFGTPGISASPLLQEFISPEGNNLNPLTSTFGKPNATELPIERLIRAVKSISPQSLSSAVSDIGSVVSMVDRIAVSAPGNSRASVGEDFVAKTKCRLQARNFMAQEGMTPTKKMKRGTTAMPLSVYSLEGSVGDNCKQFACSETSDLESTATSVGKKARTETEHALLEEIKEINQRLLDTVVEISDDEDAADSSEGATASKGCEGTTVRLSFIAVSLSPALKAHLSSTQMSPIQSLRLLVPCSYPNVSPSLLYKLPVETSKENGDLSSKAMARFNKLLRSLSQPMSLKDIANTWDACARTVICEYAQQFGGGTFSSKYGTWEKFVAAS
Length1124
PositionTail
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.04
Grand average of hydropathy-0.693
Instability index68.56
Isoelectric point9.28
Molecular weight122621.50
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31043
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     879.42|     122|     122|     209|     330|       1
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   89-  200 (142.45/30.24)	LPSSMQ..PVSSIANNNVT.SvvNQNSSMQNVAGVL...QDSS.G.QH..GlSSNMI...SGSQRQMLGR.PH.I....M..SSQQQ......QQPQG..G....QYL...YQQQLLRQnfqsgNVPNPIQQQ..QQNVL..QPNQMH.SS.QQ
  209-  330 (213.81/48.47)	QPSAVNSAPIQGLHTNQQS.S..PQFSSQQTTSQTILRQQQSSLLRQH..P.QSQQA...SGIHQQQTSL.PHQS....I..SPQQQAQMTR.QQAAS..G....SGI...QQNQMMAQ.....HVVGDMQQQQHQQRLLNQQNNVMNMRP.QQ
  331-  427 (123.64/25.43)	K....QHPPAQ.....QQFmS..QQNSLQATTQQPLGTKSNVAGLQQ...P.QQQLL...SSQTNQQSV...H......I..LSQPTAALQRtHQAGH..GlypsQGQ...QS.................QNQPSQQQMMPLQS.....HH.QQ
  430-  528 (111.21/22.26)	QPNLLQ....QDVQQRLQS.S..GQVTGSLLPPQNVV.DQQ....RQL..Y.QSQRT..lSEI........PSSS....L..DSTAQ....K.E...S..G....NAVdwqEEIKIMKD.....AYLPDV..TEIYQRVIAKLQQ.MDSLP.Q.
  529-  589 (67.81/11.17)	................QQR.S..EQFEK........LRQFKTMLERMM.................QFLSV.SKSS....I..MPPLKNKVA................I...YEKQIV.D.....FVTA......HRPR...........KPvQQ
  591-  683 (131.30/27.39)	QPPQSQMQPMQ.....QQS.S...QNGNHSHDGQANTQMQSMSM......P.RVQQS...SLENAQYNVL.SSRP....LasAPQQNIPC.....SVP..G....SSL...ESGQGNA....................LNNSQQ..VAMRS.MQ
  684-  785 (89.20/16.63)	QN...NYQEV....NNSSA.S..AQRSQLPVTSPQLLPGGSPQMTQQHlsP.QVDQKnviSSVNKNGTPVqPANSpfvvP..SPSTPLAPSP.MQVASekP....SGA...SSLSM...........GNIARQQ....................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.53|      16|      31|     813|     828|       2
---------------------------------------------------------------------------
  813-  828 (28.91/16.72)	ISPEGNNLNPLTSTFG
  847-  860 (23.28/11.84)	ISPQ..SLSSAVSDIG
  871-  885 (20.35/ 9.30)	VSAPGNSRASVGEDF.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.42|      16|      16|       3|      18|       5
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    3-   18 (28.98/20.51)	NNNWRLSIPNGESAAI
   20-   35 (30.44/22.00)	NGEWRKQLPPDSRQKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.33|      16|      16|    1027|    1042|       7
---------------------------------------------------------------------------
 1027- 1042 (29.94/18.01)	SPIQSLRLLVPCSYPN
 1044- 1059 (27.38/15.85)	SPSLLYKLPVETSKEN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31043 with Med15 domain of Kingdom Viridiplantae
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