<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31041

Description Uncharacterized protein
SequenceMDNNNWRPSGDQQRQQLYQSQRTLQEMPSYSTAQTESGNAVDWQEEVFQKIKTIQEAYLPDLAVIYQRAASRVQQMGSLPRQRRSEQFEKLKQFKAAVERMILFLSVSKRDVIPALRDKVAIYEKQTIDLVNMLRPRNPVQQGELPQQSSHVVFSSQGQQSQNQPSQQQLMMPLQSHHQQLQQPNLLQRLQSSGQFTGSLLPPQNVVDQQRQTLPEIPSSLLNSMAQTESGNSVDWQEEVYQKIKTLRDTYLSDLKEVKQRVAAKLQQNSFPHQQRSLQFNRLKQLKTMLERMIQFLSVSKRNIKPALKDKVASYERQIKRFVNMHMPRKPVQQGQLPQPQMQPVKQQSSQNGNLAINRGDWRALHPPGSRQKNVNTLLETLKKHVPYSGEEGIEELMRIAVSFEELIFNTAKNQISSEDDRSSTIVNGDGSREAFLSVLVMNVSELWWIRMNRWLVIRWCFKARATSKLQRLSEHLMDNNNWRLSIPNGESAAINNGEWRKQLPPDSRQKIVNKIMEILSRHLPQSGPEGINELMRIAARFEEKIFSGAVNQLWGIKSIYTSLIFFYFGFQTDYLRKISMKMLAMETKSQNAAGSSSTTTDANNTTSMDSIPANQGQLLPGTLPNNQSQAPQPLMSQTIQSNTASGMAGSTGLPSSIPPVSSIGNDNVTSVVNQNSNMQNVAGVLQDSSGQHGLSSNMLSGSHRQMLRRPHTMSSQQQQLLRQNFRSGNFSNPNSVLPSQIHPGSTTSATQPSAVSSAPLQGLHTNQQSSPQVSAQSSLLRQHPQSQQASVIHQQQTSLPQQSISPQQQAQLMRQQASNSSVIQQRQMMGQHVVGAMQQQHQQRLLNQQNNTMNMQQQQNQHPPAQQQFISQQNSLHQQQPLGIQSNVAGLQQPQQQLLSSQTNQQSVHMLSQPTAALQRTHQAGHGLFPSQGQQSQNQPSQQQMTPLQSHHQQLQQPNLPQQDVQQRLQSSGQVTGSLLPPQNVVDQQRQLYQSQRTLPEMPSSSVDSTAQTENANGVDWQEEVYQKIKIMKDAYLPDVTEIYQRVIAKLQQMDSLPQQQRSEQFNKLKQFKIMVERMIQFLSVSKRNIVPALRDRVAYYEKQIVDFLNMHRPRKLVQQGKLPQPQMQPVKQQSSQNGNLAINTVDWRTLHPPASRQKNVNTLLETLKKNLPYSGEEGIEELMRIAVSFEELIFNTAKNQMDYFCKISLKMQSMEEGS
Length1220
PositionTail
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.05
Grand average of hydropathy-0.764
Instability index65.78
Isoelectric point9.83
Molecular weight138597.85
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31041
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|    1283.51|     187|     191|      12|     198|       1
---------------------------------------------------------------------------
   12-  113 (152.58/48.26)	............................................................................................................QQR..QQLYQSQRT.........LQE.M.PS...Y....STAQTESG..N....AVDW........QEEVFQKIKTIQEAYLPDLAVIYQRAASRVQQ.MGSLPRQRR.SEQFE..KLKQFKAAVE.R..........MILFLSVSKRDVI
  114-  305 (324.34/110.76)	PALRDKVAIYEKQTIDLVNMLRPRNPVQQGELPQQSSHVV..FSSQ..GQQSQNQPS.QQQLMMP...LQSHHQQLQQPNL.....LQRLQSSGQFTGsllppqnvvdQQR..Q.......T.........LPE.I.PSsllN....SMAQTESG..N....SVDW........QEEVYQKIKTLRDTYLSDLKEVKQRVAAKLQQ..NSFPHQQR.SLQFN..RLKQLKTMLE.R..........MIQFLSVSKRNIK
  306-  415 (164.47/52.59)	PALKDKVASYERQIKRFVNMHMPRKPVQQGQLPQPQMQPVkqQSSQ.nGNLAINRGD.WRALHPP....GSRQKNVN..TL.....LETLKKHVPYSG............................................................................................................eEGIEELMRI.AVSFE..EL.IFNTAKN.Q.......................
  470-  576 (78.69/21.37)	............................................................................................................LQRlsEHLMDNNNW.........RLS.I.PN...G....ESAAINNG.........EWrkqlppdsRQKIVNKIMEILSRHLP...........QSGP.EGINELMRI.AARFE..E.KIFSGAVN.QlwgiksiytsLIFFYFGFQTDYL
  673-  751 (39.26/ 7.02)	..........................VNQNSNMQNVAGVL..QDSS..GQHGLSS....N..MLS....GSHRQMLRRP...........HT...MSS..........QQQ..QLLRQNFRSgnfsnpnsvLPSqIhPG...S....TTSAT...........................................................................................................
  796-  905 (110.40/32.91)	...........................QQTSLPQQSISPQ..QQAQlmRQQASNSSViQQRQMMGqhvVGAMQQQHQQR.L.....LNQ..................................................................qnN....TMNM........QQQ........QNQHPP....AQQQFIS..QQ..NSLHQQQPlGIQSNvaGLQQ......pQ..........Q.QLLS.SQTN..
  906- 1092 (287.04/97.19)	.....Q......QSVHMLS..QPTAALQR...THQAGHGL..FPSQ..GQQSQNQPS.QQQ.MTP...LQSHHQQLQQPNLpqqdvQQRLQSSGQVTGsllppqnvvdQQR..Q.LYQSQRT.........LPE.M.PS....ssvdSTAQTENA..N....GVDW........QEEVYQKIKIMKDAYLPDVTEIYQRVIAKLQQ.MDSLPQQQR.SEQFN..KLKQFKIMVE.R..........MIQFLSVSKRNIV
 1093- 1150 (71.20/18.65)	PALRDRVAYYEKQIVDFLNMHRPRKLVQQGKLPQ.................PQMQPV.KQQ.......................................................................................SSQ..NG..NlainTVDW........R....................................................................................
 1151- 1206 (55.52/12.94)	.............................................................TLHP...PASRQKNVN..TL.....LETLKKNLPYSG............................................................................................................eEGIEELMRI.AVSFE..EL.IFNTAKN.Q..........MDYF.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.92|      10|     778|     199|     208|       2
---------------------------------------------------------------------------
  199-  208 (21.96/12.13)	SLLPPQNVVD
  979-  988 (21.96/12.13)	SLLPPQNVVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.00|      27|     126|     625|     654|       3
---------------------------------------------------------------------------
  589-  624 (30.43/ 7.12)	KSQNAAGSSSTTTDANNTTSMdsiPANQGqllpgtL
  628-  654 (48.57/24.66)	QSQAPQPLMSQTIQSNTASGM...AGSTG......L
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.52|      17|      17|     753|     769|       4
---------------------------------------------------------------------------
  753-  769 (28.68/12.62)	PSAVSSAPLQGLHTNQQ
  772-  788 (28.84/12.74)	PQVSAQSSLLRQHPQSQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31041 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ETKSQNAAGSSSTTTDANNTTSMDSIPANQGQLLPGTLPNNQSQAPQPLMSQTIQSNTASGMAGSTGLPSSIPPVSSIGNDNVTSVVNQNSNMQNVAGVLQDSSGQHGLSSNMLSGSHRQMLRRPHTMSSQQQQLLRQNFRSGNFSNPNSVLPSQIHPGSTTSATQPSAVSSAPLQGLHTNQQSSPQVSAQSSLLRQHPQSQQASVIHQQQTSLPQQSISPQQQAQLMRQQASNSSVIQQRQMMGQHVVGAMQQQHQQRLLNQQNNTMNMQQQQNQHPPAQQQFISQQNSLHQQQPLGIQSNVAGLQQPQQQLLSSQTNQQSVHMLSQPTAALQRTHQAGHGLFPSQGQQSQNQPSQQQMTPLQSHHQQLQQPNLPQQDVQQRLQSSGQVTGSLLPPQNVVDQQRQLYQSQRTLPEMPSSSVDSTAQTENANG
2) MDNNNWRPSGDQQRQQLYQSQRTLQEMPSYSTAQTE
3) MLRPRNPVQQGELPQQSSHVVFSSQGQQSQNQPSQQQLMMPLQSHH
4) VNMHMPRKPVQQGQLPQPQMQPVKQQSSQNG
587
1
133
323
1019
36
178
353










Molecular Recognition Features






MoRF SequenceStartStop




NANANA