<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31040

Description Uncharacterized protein
SequenceMGTCVDKGETAMDTHDWRAQLPSGGRQKVVNKIMEALHKYLRVSGPEEMNELRKIASRFEEKIFSDAVNLTDYLRKISIKMLPLDTKAPNAAGSSLPIPGGYNRLPLNPGCHQMTVEGPVEAEPVVNTGDWRTCLPPDSRKKNANKIKGTLKEHVPNCGKEGDIELKKIAASFEELIFNTAIDQFLVLVLFSARRNSRSPKALAANLRMATLMKHLPYSGPEGINELKRIAVRFEEKVFSSSVHQNDYLRKISMKMLTMETKSQNVAGSASSIPADSSNLAFDELNNLMINNGNVEPFLLNEEPAIKSGDWRTQLPPGSRQNIVNKIMDTLKKHFPYSGPEGINELKRIAARFEEKIFSSAVHQTDYLRKISMKILTMETKAQNAAGSDSSILADSNNLTLDDIMNHLIKDNAEPSLLNVEPAINSGDWRIQLPPDSRQKNIDKLTEALKKQHLPFSGPEGVNEHSKIASRFEDKVFNTAANLNDYLRKISLEVLTIENTVKNAADPAGKANVDVGSLMDNNSLRPSYLPNRESAVDTGDWRAQLPPATRKMIVNNITDTLVKHHSGTERSNERRGFAARLEENIFNSADHQVIHWLYNINVYLLDLIHNLFFGLIFYINIQIDYLRQISAKISLLAASNSLPLDLGHLGINRGDWRTQHPPGSRQKNVNKLLETLKKHVPYSGKEGIEELMRIAVSFEELIFNTARNQIKTIQEAYLPDLAVIYQRAASRVQQMGSLPRQRRSEQFEKLKQFKAAVERMILFLSVSKRDVIPALRDKVAIYEKQTIDLVNMLRPRNPVQQGELPQQSSHVVFSSQGQQSQNQPSQQQLMMPLQSHHQQLQQPNLLQRLQSSGQFTGSLLPPQNVVDQQRQTLPEIPSSLLNSMAQTESGNAVDWQEEVYQKIKTLRDTYLSDLKEVKQRVAAKLQQIRTINEKYLAELHEIYQRASAKLEKQYSLPQQQRLKDFEKLKQFKIMLERMIRFLLISKSNIMPALKDKVDFYETQIISFLNRHRPRKPVQQGQLPQPQNGNIGINRGDWRTQHPPGSRQKNVNTL
Length1053
PositionTail
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.557
Instability index46.76
Isoelectric point9.41
Molecular weight119450.14
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31040
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|    1054.20|     116|     116|     206|     321|       1
---------------------------------------------------------------------------
    9-  122 (169.99/98.49)	ETAMDTHDWRAQLPSGGRQ.................kvvnkimealhkYLRVSGPEEMNELRKIASRFEEKIFSDAVN..............................LTDYLRKISIKMLPLDTKAPNAAGSSLPIPGGYNRLPLNPGCHQMTVEGPVEA......
  123-  187 (107.15/59.38)	EPVVNTGDWRTCLPPDSRK.knaNK.I...KGTLKE............HVPNCGKEGDIELKKIAASFEELIFNTAID..............................Q.....................................................FLV..
  188-  302 (196.67/115.10)	.LVLFSARRNSRSPKALAA....NL.R...MATLMK............HLPYSGPEGINELKRIAVRFEEKVFSSSVH..............................QNDYLRKISMKMLTMETKSQNVAGSASSIPADSSNLAFDELNNLMINNGNVEP.FLLNE
  303-  420 (221.74/130.70)	EPAIKSGDWRTQLPPGSRQ....NI.VnkiMDTLKK............HFPYSGPEGINELKRIAARFEEKIFSSAVH..............................QTDYLRKISMKILTMETKAQNAAGSDSSILADSNNLTLDDIMNHLIKD.NAEP.SLLNV
  421-  532 (172.03/99.76)	EPAINSGDWRIQLPPDSRQ...kNIdK...LTEALK..........kqHLPFSGPEGVNEHSKIASRFEDKVFNTAAN..............................LNDYLRKISLEVLTIENTVKN....AAD.PAGKANV...DVGSLMDNNS.LRPsYLPNR
  533-  650 (109.69/60.96)	ESAVDTGDWRAQLPPATRKmivnNI.....TDTLVK............H..HSGTERSNERRGFAARLEENIFNSADHqvihwlyninvylldlihnlffglifyiniQIDYLRQISAK.ISLLAASN.......SLPLDLGHLG......................
  651-  709 (76.94/40.57)	...INRGDWRTQHPPGSRQ.knvNK.L...LETLKK............HVPYSGKEGIEELMRIAVSFEELIFNTARN..............................Q..........................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     430.13|     118|     216|     710|     828|       2
---------------------------------------------------------------------------
  711-  828 (214.12/136.75)	KTIQEAYLPDLAVIYQRAASRVQQMGSLPRQRRSEQFEKLKQFKAAVERMILFLSVSKRDVIPALRDKVAIYEKQTIDLVNMLRPRNPVQQGELPQ.QSSHVVFSSQGQQSQNQPSQQQ
  929- 1047 (216.01/133.81)	RTINEKYLAELHEIYQRASAKLEKQYSLPQQQRLKDFEKLKQFKIMLERMIRFLLISKSNIMPALKDKVDFYETQIISFLNRHRPRKPVQQGQLPQpQNGNIGINRGDWRTQHPPGSRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.11|      19|      24|     858|     876|       4
---------------------------------------------------------------------------
  858-  876 (33.96/27.41)	SLL......PPQNVVDQQRQTLPEI
  879-  903 (27.15/20.08)	SLLnsmaqtESGNAVDWQEEVYQKI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31040 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MLRPRNPVQQGELPQQSSHVVFSSQGQQSQNQPSQQQLMMPLQSHH
2) RPRKPVQQGQLPQPQNGNIGINRGDWRTQHPPGSRQKNVNTL
792
1012
837
1053










Molecular Recognition Features






MoRF SequenceStartStop




NANANA