<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31040

Description Uncharacterized protein
SequenceMGTCVDKGETAMDTHDWRAQLPSGGRQKVVNKIMEALHKYLRVSGPEEMNELRKIASRFEEKIFSDAVNLTDYLRKISIKMLPLDTKAPNAAGSSLPIPGGYNRLPLNPGCHQMTVEGPVEAEPVVNTGDWRTCLPPDSRKKNANKIKGTLKEHVPNCGKEGDIELKKIAASFEELIFNTAIDQFLVLVLFSARRNSRSPKALAANLRMATLMKHLPYSGPEGINELKRIAVRFEEKVFSSSVHQNDYLRKISMKMLTMETKSQNVAGSASSIPADSSNLAFDELNNLMINNGNVEPFLLNEEPAIKSGDWRTQLPPGSRQNIVNKIMDTLKKHFPYSGPEGINELKRIAARFEEKIFSSAVHQTDYLRKISMKILTMETKAQNAAGSDSSILADSNNLTLDDIMNHLIKDNAEPSLLNVEPAINSGDWRIQLPPDSRQKNIDKLTEALKKQHLPFSGPEGVNEHSKIASRFEDKVFNTAANLNDYLRKISLEVLTIENTVKNAADPAGKANVDVGSLMDNNSLRPSYLPNRESAVDTGDWRAQLPPATRKMIVNNITDTLVKHHSGTERSNERRGFAARLEENIFNSADHQVIHWLYNINVYLLDLIHNLFFGLIFYINIQIDYLRQISAKISLLAASNSLPLDLGHLGINRGDWRTQHPPGSRQKNVNKLLETLKKHVPYSGKEGIEELMRIAVSFEELIFNTARNQIKTIQEAYLPDLAVIYQRAASRVQQMGSLPRQRRSEQFEKLKQFKAAVERMILFLSVSKRDVIPALRDKVAIYEKQTIDLVNMLRPRNPVQQGELPQQSSHVVFSSQGQQSQNQPSQQQLMMPLQSHHQQLQQPNLLQRLQSSGQFTGSLLPPQNVVDQQRQTLPEIPSSLLNSMAQTESGNAVDWQEEVYQKIKTLRDTYLSDLKEVKQRVAAKLQQIRTINEKYLAELHEIYQRASAKLEKQYSLPQQQRLKDFEKLKQFKIMLERMIRFLLISKSNIMPALKDKVDFYETQIISFLNRHRPRKPVQQGQLPQPQNGNIGINRGDWRTQHPPGSRQKNVNTL
Length1053
PositionTail
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.557
Instability index46.76
Isoelectric point9.41
Molecular weight119450.14
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31040
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|    1054.20|     116|     116|     206|     321|       1
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    9-  122 (169.99/98.49)	ETAMDTHDWRAQLPSGGRQ.................kvvnkimealhkYLRVSGPEEMNELRKIASRFEEKIFSDAVN..............................LTDYLRKISIKMLPLDTKAPNAAGSSLPIPGGYNRLPLNPGCHQMTVEGPVEA......
  123-  187 (107.15/59.38)	EPVVNTGDWRTCLPPDSRK.knaNK.I...KGTLKE............HVPNCGKEGDIELKKIAASFEELIFNTAID..............................Q.....................................................FLV..
  188-  302 (196.67/115.10)	.LVLFSARRNSRSPKALAA....NL.R...MATLMK............HLPYSGPEGINELKRIAVRFEEKVFSSSVH..............................QNDYLRKISMKMLTMETKSQNVAGSASSIPADSSNLAFDELNNLMINNGNVEP.FLLNE
  303-  420 (221.74/130.70)	EPAIKSGDWRTQLPPGSRQ....NI.VnkiMDTLKK............HFPYSGPEGINELKRIAARFEEKIFSSAVH..............................QTDYLRKISMKILTMETKAQNAAGSDSSILADSNNLTLDDIMNHLIKD.NAEP.SLLNV
  421-  532 (172.03/99.76)	EPAINSGDWRIQLPPDSRQ...kNIdK...LTEALK..........kqHLPFSGPEGVNEHSKIASRFEDKVFNTAAN..............................LNDYLRKISLEVLTIENTVKN....AAD.PAGKANV...DVGSLMDNNS.LRPsYLPNR
  533-  650 (109.69/60.96)	ESAVDTGDWRAQLPPATRKmivnNI.....TDTLVK............H..HSGTERSNERRGFAARLEENIFNSADHqvihwlyninvylldlihnlffglifyiniQIDYLRQISAK.ISLLAASN.......SLPLDLGHLG......................
  651-  709 (76.94/40.57)	...INRGDWRTQHPPGSRQ.knvNK.L...LETLKK............HVPYSGKEGIEELMRIAVSFEELIFNTARN..............................Q..........................................................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     430.13|     118|     216|     710|     828|       2
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  711-  828 (214.12/136.75)	KTIQEAYLPDLAVIYQRAASRVQQMGSLPRQRRSEQFEKLKQFKAAVERMILFLSVSKRDVIPALRDKVAIYEKQTIDLVNMLRPRNPVQQGELPQ.QSSHVVFSSQGQQSQNQPSQQQ
  929- 1047 (216.01/133.81)	RTINEKYLAELHEIYQRASAKLEKQYSLPQQQRLKDFEKLKQFKIMLERMIRFLLISKSNIMPALKDKVDFYETQIISFLNRHRPRKPVQQGQLPQpQNGNIGINRGDWRTQHPPGSRQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.11|      19|      24|     858|     876|       4
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  858-  876 (33.96/27.41)	SLL......PPQNVVDQQRQTLPEI
  879-  903 (27.15/20.08)	SLLnsmaqtESGNAVDWQEEVYQKI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31040 with Med15 domain of Kingdom Viridiplantae
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