<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31032

Description Uncharacterized protein
SequenceMEGNSNWKPNQQGGDSLASNNANDWRSQLAPDMRKKVILAIVEKLKIYYPTRHPNAIKNTAFSFEGKIYAAAKDKDDYMRTIKGNIMNFDRKLQSSNVQSGSSVNGTNTPAPAAQALNQGQSVLTSLPYTQTPTSQQWLHQNNNNIQSNLNILESSGLPTDVSSAAQNLNIQMGEGVHSNLLPGSQRQIHGREHHLPQQPQSSNYFQNQMDQQLLKEEVQPSYMQQQQSLLKQPIQQQLPHQTSLSNIQQSFPQPSALSSLPNSQFLSRQDQFPTQRVHSSHHQQQMHVPSQEQKRQEREQLISHLMNDKDTQQNHLTPQQNNGEKQAAFRASSSQQNNIASFQERPLQNNSIQQRLYSHSNNASALPSQQKQYNVHGSSCLAAQGQEVGQSQTMIQQQYQPQHTMQQAQNRILQQPLDDTQRFQASGSLLQTQQNQPYQLQRTSPANTFTSQDSTGQTVNASGGGDWQEETYQKIKALKEKYILVVGALYQKLSNKLREIDAHPQQKIQHGHMEKLRASKATLKLVLVFLNVSRNAITESHREKFNIYEEQLLRFVKHNQTVTRRPMQQQQQQQQQVHLPPSQTHQTALQSQSGHQVFHVPQSSALSNLTTSHTAMPHSSQTRPKMEPKEETNIMTLPASNPQPSMFQQKQFHHLSMQQRRQQQPQKNHQQLQMPKNEMNDVRMSQRVNNKAGLRQQNISPNQRHLAKPLASPQLVDQQILPTTFNKNGTSSQSGGSPFVAPSSNLGDPENPISVESPSSHDYQLQPAAQEHPPEPNAERPIDRLIKAFQSSSPESLAQSINEMSSVISLTDRLAGCVQSIGGSRARVPQDLSERTRLRLQRGETNPTNKRFKRSITTQPIDITSETERYKQFSSLESEVDSTASSGSKANKIEAGLALLQEIMEVNRRLVETMVSICSEDVGPSEVTTGTIVMCSYAPVALCDTFQALYKSGHVSQIQPLRLLVPENYPHSPILIENIPFDSSVNKHEDLSARTRSRFGLSMKEFSEPMSLTEIAQAWDACARATMAEYAERHGGGTFSSKHGHWEPVLRAS
Length1054
PositionTail
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.05
Grand average of hydropathy-0.878
Instability index71.57
Isoelectric point9.15
Molecular weight118507.52
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31032
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     540.14|      75|      76|     136|     210|       1
---------------------------------------------------------------------------
   23-  102 (58.44/19.54)	NDWRSQL..APDMRK..KviLAIVE...K.LK...IyyPTRHPN....AIKNTA......FSF............EG..........................kiyaaakdkddyMRT..IK........GNIMNFD......RKLQSSN.V..QSGS
  136-  210 (129.88/52.30)	QQWLHQN..NNNIQS..N..LNILE...S.SG...L..PTDVSS....AAQNLN......IQM...........GEGVHSN...............L..LPGS............QRQ..IH........GREHHLP......QQPQSSNYF..QNQM
  212-  287 (85.89/32.13)	QQLLKEEvqPSYMQQ..Q..QSLLKqpiQ.QQ...L..PHQTSL....S....N......IQQ...........SFPQPSA...............LssLPNS..............Q..FL........SRQDQFP......TQRVHSSHH..QQQM
  314-  391 (75.31/27.27)	QNHLTPQ..QNNGEK..Q..AAFRA...S.SS...Q..QNNIASfqerPLQNNS......IQQ...........RLYSHSN............nasA..LPSQ............QKQynVH........G.SSCLA......AQGQEVG.......Q
  392-  456 (57.15/18.95)	SQTM........IQQ..Q..YQ................PQHTMQ....QAQNRI......LQQplddtqrfqasG.....S...............L..LQTQ............QNQ...............PYQL......QRTSPANTFtsQDST
  466-  553 (63.39/21.81)	GDWQEET..YQKIKAlkE..KYILV...V.GA...L..YQKLSN....KLREIDahpqqkIQH...........G...HME...............K..LRAS............KAT..LKlvlvflnvSRNAITE......SHREKFNIY..EEQL
  575-  675 (70.08/24.88)	QQQVHLP..PS..QT..H..QTALQ...SqSGhqvF..HVPQSS....ALSNLT......TSH...........TAMPHSSqtrpkmepkeetnimT..LPAS....npqpsmfqQKQ..F............HHLSmqqrrqQQPQ.KNHQ..QLQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.77|      20|      22|     732|     753|       2
---------------------------------------------------------------------------
  732-  751 (34.50/11.18)	SSQSGGSPFVAPSSNLGDPE
  757-  776 (35.27/14.46)	ESPSSHDYQLQPAAQEHPPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.84|      15|      16|     906|     920|       3
---------------------------------------------------------------------------
  906-  920 (25.60/21.86)	EVNRRLVET.MVSICS
  922-  937 (22.24/17.91)	DVGPSEVTTgTIVMCS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.81|      15|      16|     851|     865|       4
---------------------------------------------------------------------------
  851-  865 (25.72/16.26)	KRFKR.SITTQPIDIT
  869-  884 (20.09/11.08)	ERYKQfSSLESEVDST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.31|      21|     200|     782|     813|       5
---------------------------------------------------------------------------
  784-  804 (35.06/33.13)	DRLIKAFQS..SSPESLAQSINE
  813-  835 (32.25/ 7.91)	DRLAGCVQSigGSRARVPQDLSE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31032 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DRKLQSSNVQSGSSVNGTNTPAPAAQALNQGQSVLTSLPYTQTPTSQQWLHQNNNNI
2) DVSSAAQNLNIQMGEGVHSNLLPGSQRQIHGREHHLPQQPQSSNYFQNQMDQQLLKEEVQPSYMQQQQSLLKQPIQQQLPHQTSLSNIQQSFPQPSALSSLPNSQFLSRQDQFPTQRVHSSHHQQQMHVPSQEQKRQEREQLISHLMNDKDTQQNHLTPQQNNGEKQAAFRASSSQQNNIASFQERPLQNNSIQQRLYSHSNNASALPSQQKQYNVHGSSCLAAQGQE
3) FQASGSLLQTQQNQPYQLQRTSPANTFTSQDSTGQTVNASGGGD
4) HNQTVTRRPMQQQQQQQQQVHLPPSQTHQTALQSQSGHQVFHVPQSSALSNLTTSHTAMPHSSQTRPKMEPKEETNIMTLPASNPQPSMFQQKQFHHLSMQQRRQQQPQKNHQQLQMPKNEMNDVRMSQRVNNKAGLRQQNISPNQRHLAKPLASPQLVDQQILPTTFNKNGTSSQSGGSPFVAPSSNLGDPENPISVESPSSHDYQLQPAAQEHPPEPNAERPIDRLIKAFQSSSPESLAQSINEM
5) QSIGGSRARVPQDLSERTRLRLQRGETNPTNKRFKRSITTQPI
6) QSQTMIQQQYQPQHTMQQAQNRILQQPLDDTQ
90
161
424
559
820
391
146
388
467
805
862
422










Molecular Recognition Features






MoRF SequenceStartStop




1) IDRLIK
783
788