<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31030

Description Uncharacterized protein
SequenceMSSELKQLIVVVEGTAALGPYWQTIVSDYLLKIIRSFCGTELNGERNPVSNVELSLVIFNSHGSYCACLVQRSGWTKDVNIFLRWLSSIQFAGGGFNEAATAEGLAEALMMFSPPSGQAQPSNDLKRHCILITASNPYSLPTPVYRPKLQNPERYENGHAQSESRLSDAETVASYFSRCSVSLSVVCPKQLPKIRALYNAGKPNAQSADLSIDTVKNAFYLVLISENFVEARAALSHSATNFPQTTQSPVKVDRATVAPSLPVTGQPLPPVPSANGPIMNRQPVSVGPVPTATVKVEPGTISSMAAVPTFPHIPSVARPATQAIPSVQTSSASPVSQEMVTKAENAPDIKPVVGGMTPQLRTGPPGGANVNLLNNLSQVRQVMSSAALAGASSSGQSAVAMHMSNMISTGMATSLPPSQTAFSSGQQGNTSMAGSGALAGTEQAGQSPAPNNAFSPQTTSNLGVSQPMQGMNQGSHSGAQMMQSGISMNQNMMSQGNVSSGTGGMMPTPGVGQQTQSGIQQLGGSNSSAPNVQLSQPSSGAMQPSQSKYVKVWEGNLSGQRQGQPVLITRLEGYRSASASDSLAANWPPNMQIVRLISQDHMNNKQYVGKADFLVFRAMSQHGFLGQLQDKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQIQNQQQQQLQQQQQIQQQQQQQQIQQQQQQQIQQQHHHQQQQLPQLQQQQQHQMSQLQHHQQQQLSQLHHHHQQQQQHQMSQLQHHQQQQLPQLQQQRIRAEGLRLNRRVGIEYLAVWLTRSGSVPRYNLMEDAAPAEISRVQNWQWIRYEVELDGDGLGVRVNKELFERVVEEEMERIEKEVGKDKFKKGMYKDNCKKFTKQCTASELDDFLTLAVYDHIVAHYPNNVSRP
Length902
PositionUnknown
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.05
Grand average of hydropathy-0.461
Instability index60.13
Isoelectric point8.90
Molecular weight98583.20
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
glyoxysome	GO:0009514	IEA:UniProtKB-KW
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
malate synthase activity	GO:0004474	IEA:UniProtKB-EC

GO - Biological Process
glyoxylate cycle	GO:0006097	IEA:UniProtKB-KW
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central
tricarboxylic acid cycle	GO:0006099	IEA:UniProtKB-KW









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31030
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     143.01|      20|      20|     680|     699|       1
---------------------------------------------------------------------------
  680-  699 (42.23/13.90)	QQQQQIQQQQQQQ...QIQQQQQ
  703-  721 (40.15/12.90)	QQQHH.HQQQQLP...QLQQQQQ
  725-  747 (33.67/ 9.81)	SQLQHHQQQQLSQlhhHHQQQQQ
  748-  768 (26.96/ 6.61)	HQMSQLQHHQQQQ.lpQLQQQR.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     346.67|      66|      67|     410|     476|       2
---------------------------------------------------------------------------
  239-  284 (57.81/21.15)	..ATNFP..QTTQSPVK....VDR.AT.............VAPSLPV...TG.....Q.PLP........PVPSAN.GPIMNRQPV....
  285-  346 (77.80/29.07)	....SVGPVPTATVKVE....PGTiSS.............MAAVPTF...PHIPSVAR.PAT...QAIPSVQTSSASPVSQEMVTKAENA
  352-  408 (28.24/ 6.51)	.VVGGMTP...QLRTGP....PGG.ANvnllnnlsqvrqvMS.SAAL...AGASSSGQSAVAmhmSNMIS....................
  410-  475 (116.56/51.67)	GMATSLPPSQTAFSSGQ....QGN.TS.............MAGSGAL...AGTEQAGQSPAP...NNAFSPQTTSNLGVSQPMQGMNQGS
  480-  540 (66.27/25.35)	QMM......QSGISMNQnmmsQGN.VS..............SGTGGMmptPGVGQQTQSGIQ...QLGGSNSSAPNVQLSQPSSG.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.42|      36|      40|     139|     176|       3
---------------------------------------------------------------------------
  139-  176 (57.69/40.42)	SLPTPVYRPKlQNPE.R..YENGHAQSES.RLSdAETVASYF
  180-  219 (50.73/27.40)	SVSLSVVCPK.QLPKiRalYNAGKPNAQSaDLS.IDTVKNAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.73|      15|      20|     624|     642|       4
---------------------------------------------------------------------------
  624-  639 (21.50/10.09)	FLGQLQDKKlCAVIQL
  644-  658 (23.23/12.06)	LLLSVSDKA.CRLIGM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.08|      19|      20|     822|     840|       5
---------------------------------------------------------------------------
  822-  840 (30.64/22.71)	VELDGDGLGVRVNKELFER
  842-  860 (30.44/22.52)	VEEEMERIEKEVGKDKFKK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31030 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSHSATNFPQTTQSPVKVDRATVAPSLPVTGQPLPPVPSANGPIMNRQPVSVGPVPTAT
2) PSVARPATQAIPSVQTSSASPVSQEMVTKAENAPDIKPVVGGMTPQLRTGPPGGANVNLLNNL
3) QQQHHHQQQQLPQLQQQQQHQMSQLQHHQQQQLSQLHHHHQQQQQHQMSQLQHHQQQQLP
4) SAVAMHMSNMISTGMATSLPPSQTAFSSGQQGNTSMAGSGALAGTEQAGQSPAPNNAFSPQTTSNLGVSQPMQGMNQGSHSGAQMMQSGISMNQNMMSQGNVSSGTGGMMPTPGVGQQTQSGIQQLGGSNSSAPNVQLSQPSSGA
235
314
703
397
293
376
762
541










Molecular Recognition Features






MoRF SequenceStartStop




NANANA