<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31028

Description Uncharacterized protein
SequenceMDQSQRIVAAPSSSRSYQFHPARAAIVDLLNLYLGRGTRQNPDEPIRDPPNKSQKRVHAPVRDLPPRNDQFIADFEKLQTQFNDPDQLRAITESVVISMVLQCSNHAPRAEFLLFTLRTLCRIGYVNWDSFLPSLLSSVSAAEASLSQAATAAATSSQFLVPVGVSSGNESTAFSKSLDNVQQIDMRNSSQRVRAAAVNSLRQLSCKIILIGVEFNLEPTTHAEIFQCMMSWLVNWDKSEDSPGKRWRSEKSLAEWLRSCLEVIWLLVDVGKSKIPFYELLRSGLQFVENIPDDEALFALVMEIHRRRDAMAMHMLMLDQHLHCPTFGTHRISSQPTANVSAEAVAHLRYSPITYPSVLGEPLSGEDLAMSVPQGSLDWERAVRCIKHAIRTTPSPEWWKRVLVVTPCYRPSAQAGPIPGAVFTSEMICEAIIDRIVELLKLTNSDANCWQEWLVFSDIFFFLIKSGCTDFVDFIDKLVLRLNGDDNHILRTNHVTWLLAQIIRVELVMTALNSDPKKAETTRKILSFHREDRTDPNNPQSVLLDFVSSCQNLRIWSLSATTRAYLNNEQLLKGKQIDEWWRSQGERMMDYMNLDDRSIGMFWVVSYTMAQPACETVINWLSSAGVAELLPGVTPNERTMMMQEVSPLPMSLLSGFSMNLCLKLALQMEEALFVSQLVVPSIAMVETYTRLLLISPHSMFRSHFTQIAQRNASLLSKPSVSLLVLEILNYRLLPLYRYQGKSKSLLYDVTKILSALKAKRGDHRVFRLAENLCMNLILSLRDFFSVKRDQKGPTDFTETLSRITIMTLAITIKTRGIADADHMVYLQTMLEQVLATSQHTWSEKTLRHFPSLLRDALIGRVDKRGLSIQAWQQAETTVLNQCTQLLSPAAEPAYVTTYLSHSFPQHRQYLCAGACLLMQGNPDKINSANLARVLREVTPDEVTANIYTFVDVLLHNVHLDLQRGHGLEEILNKNDANLAFFFWTHEMLPLDIFLVALIDRDDDPHALIIAKRILERPELLQRINVFCVNRGNPEHWLCTQVFKRNELQKALGNHLAWKDNRHPTFFDDIAARLLPVIPLVVYRLIENNAMDAADKILTAYSNFLAYHPFRFTFVRDILAYFYGHLPGQLVVKILRVLGLSKIPFSESFPQYITHTGPATCPPLDYFANLLLNLVNNVIPPLSSSSSNCSSRSGSMADILNTSSRPPHGKTPGASQPGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPVSPAQIVSSLVQIIVNIQSTLIQSGNGFHGAANGVGQGSSVLPTSPSGGSTDSMGASRSSCMNTASFVSRSGYTCQQLSCLLIQACGLLLAQLPPEFHTQLYVEASRVTRETWWLSDGKRSQGEVDSAVGYALMDPTWAAQDNTSTAIGNVVALLHAFFSNLPQEWLDGTHLIIKNIRPVTSVAMLRVAFRIMGPLLPRLANAHALFNKTLALLLSTMVDVFGKNSQTPVPVEASQIADLIDFLHHVVHYEGQGGAVQSSSKPRADTLALIGRAADSLRPDVQHLLSHLRTDPNSSIYAAAHQNTAKSNTS
Length1564
PositionTail
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.08
Grand average of hydropathy-0.054
Instability index43.78
Isoelectric point6.86
Molecular weight174607.49
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31028
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     260.75|      62|     107|     105|     166|       1
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  105-  166 (101.76/54.78)	NHAPRAEFLLFTL.......RTLCRIGY.VNWDSFL..PSL....LSSVSAAEASLSQAATAAATSSQFLVPVGVS
  216-  273 (93.01/49.48)	NLEPTTHAEIFQ...........CMMSWlVNWDKSE..DS.....PGKRWRSEKSLAEWLRSCLEVIWLLVDVGKS
  289-  356 (65.98/33.12)	ENIPDDE.ALFALvmeihrrRDAMAMHM.LMLDQHLhcPTFgthrISS..QPTANVSAEAVAHLRYSPITYP....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     220.01|      69|     109|     482|     553|       2
---------------------------------------------------------------------------
  482-  553 (106.03/76.30)	LNGDDNHILRTNHVTWLLAQIIrVELVMTALNSdPKKAETTRKILSFHRE...DRTDPnNPQSVLLDF.VSSCQNL
  592-  664 (113.99/68.89)	MNLDDRSIGMFWVVSYTMAQPA.CETVINWLSS.AGVAELLPGVTPNERTmmmQEVSP.LPMSLLSGFsMNLCLKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     223.39|      70|     540|     869|    1010|       3
---------------------------------------------------------------------------
  938- 1010 (110.64/176.17)	TPDEVTA.NIYTFVDVLLHNVHLDLQRGHGLEEILNKNDaNLAFFFWTHEMLPLDI.FLVALIdRdDDPHALIIA
 1481- 1552 (112.75/49.30)	TPVPVEAsQIADLIDFLHHVVHYEGQGGAVQSSSKPRAD.TLALIGRAADSLRPDVqHLLSHL.R.TDPNSSIYA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.29|      28|     547|     687|     729|       5
---------------------------------------------------------------------------
  687-  719 (42.95/34.99)	TytrllLISPHSMFRSHFTQIAQRNASLLSKPS
 1273- 1300 (47.34/42.34)	T.....LIQSGNGFHGAANGVGQGSSVLPTSPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.31|      18|     328|     454|     473|       8
---------------------------------------------------------------------------
  454-  473 (29.75/25.32)	LVFSDifFFLIK...SGCTDFVD
  778-  798 (28.56/16.81)	LSLRD..FFSVKrdqKGPTDFTE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.61|      19|     965|     433|     453|      12
---------------------------------------------------------------------------
  433-  453 (32.52/25.39)	IDRIVELLKLTNSdaNCWQEW
 1401- 1419 (36.08/21.58)	IGNVVALLHAFFS..NLPQEW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     216.33|      64|    1167|       8|      72|      13
---------------------------------------------------------------------------
    8-   72 (108.52/73.96)	VAAPSSSRSYQFHPARAAIVDLLNLYLGRGTRQNPDEPIRDPPNKSQ.KRVHAPVRDlPPRNDQFI
 1177- 1241 (107.80/69.18)	VIPPLSSSSSNCSSRSGSMADILNTSSRPPHGKTPGASQPGPANASEgQKAFYQIQD.PGTYTQLV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31028 with Med23 domain of Kingdom Viridiplantae
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