<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31023

Description Uncharacterized protein
SequenceMEGENVTEPLNTAAPSTGESIFATAPPPSDSVLATAASSVSPSSKSQPEQSSMSIATTAQLSANAAASSIANPIPQAPHMLQNPPFGRPGTLAPPGLMTSPPAFPGSNPFSRPGGPTQINLGVHPHMYPPYHSLPPMHGTPQGMWLQPPPMGGIPRAHFPSHPTPFPGNYPFPVRGPSSPLPYPVSQPLPVGNAGAVHALPGHQPLDVPPGQKPEALSGIDDRAGSQLVGNRVDAWTAHKSETGVVYYYNSVTGQSTYEKPPGFEREPDKVPVQPIPISMENIRGTDWALVSTNDGKKYYYNNKTKVSSWQIPPEVKDLVKKTEERSTESLASVPSADLTEKGSEQSSLSAPAINNGGRDAVSLRTTIVPGFSALDLVKKKLHDSGVPVSSTTTSEANGGKSNEVTPSGESGDGMGKVKDATEGGDLSDSTSDSEDEDSGPSKEECIKQFKEMLKERGVAPFSKWEKELPKIIFDPRFKAIQSHSVRRSLFEQYVKTRAEEERREKRAAHKAAVEGFKQLLDEASKDIDKHTDYHTFKKKWGNDLRFESLERKEREALLNERILSLKRAADQKAQEIRAAAASDFKTMLHEREVSINSHWSKVKDSLRNDPRYRSAAHEDREVFYNEYIAELKAARGDDYEMKSRGEEDKLRERERELRKRKEREVLEVERVRQKIRRKEAVASYQALLVEKIRDPEASWTESKPKLERDPQKRALNPDLDPADKEKLFRDHIKTLYERCARDFKALLVEVLSSEAASQQTEEAKTVLNSWSTAKQVLKSDIRYSKMPRDDREVIWRRYAEDILRKQKQDSPQKEEKPRDYKI
Length823
PositionUnknown
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.863
Instability index51.08
Isoelectric point7.71
Molecular weight91638.57
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31023
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     123.33|      22|      22|     114|     135|       1
---------------------------------------------------------------------------
  100-  123 (33.00/12.16)	SPPAFPgsnPF.SRP...GGPTQINLGV
  124-  148 (40.08/16.25)	HPHMYP...PYHSLPpmhGTPQGMWLQP
  149-  166 (25.52/ 7.83)	PPMGGI...PRAHFP...SHPTPF....
  180-  196 (24.73/ 7.38)	.PLPYP...VSQPLP...VG....NAGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     189.89|      51|      51|     209|     259|       2
---------------------------------------------------------------------------
  209-  259 (89.93/68.67)	PPG..QKPE.........ALSGIDDRAGSQLVGNRVDAWTAHKSETGVVYYYNSVTGQSTYE
  261-  311 (61.25/43.80)	PPGfeREPDkvpvqpipiSMENI...........RGTDWALVSTNDGKKYYYNNKTKVSSWQ
  313-  345 (38.70/24.25)	PPE..VK.D.........LVKKTEERSTESLASVPSADLTEKGSE.................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     226.26|      27|      27|     584|     610|       3
---------------------------------------------------------------------------
  449-  475 (38.09/22.12)	QFKEML.............KE.RGVAPFSK..WEKELPKIIFD
  516-  544 (33.34/18.44)	GFKQLL.............DE.ASKDIDKHtdYHTFKKKWGND
  584-  610 (46.41/28.57)	DFKTML.............HE.REVSINSH..WSKVKDSLRND
  612-  639 (26.30/12.97)	RYRSAA.............HEdREVFYNEY..IAELKAARGDD
  649-  668 (20.14/ 8.19)	D.K..L.............RE.RERELRKR....KEREVLE..
  684-  710 (35.31/19.96)	SYQALL.............VE.KIRDPEAS..WTESKPKLERD
  743-  781 (26.66/13.25)	DFKALLvevlsseaasqqtEE.AKTVLNS...WSTAKQVLKSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.23|      14|      15|     400|     413|       7
---------------------------------------------------------------------------
  400-  413 (24.21/12.76)	GKSNEVTPSGESGD
  416-  429 (22.02/10.92)	GKVKDATEGGDLSD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31023 with Med35 domain of Kingdom Viridiplantae
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