<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31022

Description Uncharacterized protein
SequenceMANNPHYPGIQPFQHPNASSVDLPRGFAPSMNFQHRPPIQAPQSEQVAHLASQNFQYVGRGATMNNGFPPQSYTPQLLQSMHHSVERPSQSNQGQHVPLGHPSLISQPNVPVASGTFLPEPYLRTSDINMNGGPRALFSHQSATPFGHLRAPTQVTGPSSHSQAQQSAPISQANAPSSIMNPTFEHPKVASSQPIPSQEAATDWVEHTSADGRRYFFNKKTKQSTWEKPVELMTLFERADAKTDWKEHSSPDGRKYYYNKVTKQSTWTMPEEMKIAREQAENASVQGLHAEGVVDASKVLSRSETASTAAPTGLPNQTSSTPPTSDTSEKLALTSDREQAASVPGSSSPVENVDQVQAIADKTPELCDTAKTDNPSATVMITSAATLVDKETVSTENSGDADDVSAKNTNQGSGTGPKESQKHVVDSERVDSQSEGKQIHQENISYTNKSEAVDVFKSLLKSANVGSDWTWEQAMREIINDRRYGVLRTLGERKQAFNEFLAQMRKAAEEEKIARQLKRYEDFRRMLEESVELTPSTRWSKAVTMLEDDERFKVVEREKDRRNIFEDHISDLKEKERVKAFGDRKRNIVEYRRFLESCNFIKPNSQWRKVQDRLEVDERCSRLEKIDQLEIFQEYLRDLEREEEERKKIQKEELKKAERKHRDEFRGLIDEHIATGELTAKSSWRDYLVKVKDLPVYLAIASNSSGATPKELFEDAAEDLKRKYHELKSQIKDVLKLRKVTLSTESTFDEFKVSVSEGISSPSIPDFKLKLVFDDLLERAKEKEEKEARKQTRNTEKLVDMLRSFKYITASSSWEDYKHLVEGTEKFRTIGDESFRKKTFEDYISHLKEQAKRIKQNKKEHVREEHDREKDKYGREKERVRERDNRDHRKQGSADNYNHDVDELHGKERRRSGRDSHSRHRERHTSVKENEADHYKESHKAGRGHKESRQQRGLVREAEDEGREKRRRKEGDSEQTKRAEKEEELEDGECGRRRMAEEQLYQQMYQLGDVLNEATDSYFSSLGSDGVDGLASATLNIIVEEAYRIRDLRTAEKNLQTTASNIGKKDQMPSLNKNKKRIQELTTALALRPDTAANAGQIAHWTREKEACETRVANMEQNN
Length1119
PositionUnknown
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-1.078
Instability index50.33
Isoelectric point6.63
Molecular weight127926.31
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31022
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.49|      38|      38|     202|     239|       1
---------------------------------------------------------------------------
  202-  239 (74.43/51.60)	TDWVEHTSADGRRYFFNKKTKQSTWEKPVELMTLFERA
  243-  280 (75.06/52.11)	TDWKEHSSPDGRKYYYNKVTKQSTWTMPEEMKIAREQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     101.35|      22|      23|     151|     172|       2
---------------------------------------------------------------------------
   29-   43 (18.73/ 7.12)	PS..MN.F.QHrPPIQAPQ..................
   88-  120 (25.29/12.46)	PSQ.SNQG.QH.VPLGHPSLI.SQpnvpvasgtflpE
  152-  175 (32.82/18.59)	PTQVTGPS.SH.SQAQQSAPI.SQ..........anA
  176-  198 (24.51/11.82)	PSSIMNPTfEH.PKVASSQPIpSQ.............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     531.92|      64|      65|     516|     579|       3
---------------------------------------------------------------------------
  426-  468 (34.45/13.92)	...........DS..ER...VDSQS...EGKQIHQENISYT.NKS.EAV..........................................DvFKSLL.KSA...NVGSD
  469-  536 (79.22/41.75)	WTWEQAMREIIND..RRYGVLRTLG...ERKQAFNEFLAQM.RKA.AEEE....kiarQL......................KRYE.....D.FRRMLEESV...ELTPS
  537-  604 (85.06/45.38)	TRWSKAVTMLEDD..ERFKVVEREK...DRRNIFEDHISDL.KEK.ERVK....afgdRK......................RNIV.....E.YRRFLESCN...FIKPN
  605-  681 (60.65/30.21)	SQWRKVQDRLEVD..ERCSRLEK.I...DQLEIFQEYLRDLeREE.EERK...kiqkeEL......................KKAErkhrdE.FRGLIDEHIatgELTAK
  682-  763 (48.07/22.39)	SSWRDYLVKVKDL..PVYLAIASNSsgaTPKELFEDAAEDL.KRK...............yhelksqikdvlklrkvtlsteSTFD.....E.FKVSVSEGI...S.SPS
  764-  811 (40.23/17.51)	IPDFK.LKLVFDDllERAKEKEEKE...AR...........................kQT......................RNTE.....K.LVDMLRSFK...YITAS
  812-  873 (76.64/40.15)	SSWEDYKHLVEGT..EKFRTIGDES...FRKKTFEDYISHL.KEQaKRIK........QN......................KK.E.....H.VRE..EHDR...EKDKY
  874-  940 (56.41/27.57)	GREKERVR..ERD..NR...DHRKQ...GSADNYNHDVDEL.HGK.ERRRsgrdshsrHR......................ERHT.....S.VKENEADHY...KESHK
  948-  998 (51.19/24.33)	SRQQRGLVREAED..E.....GREK...RRRK..EGDSEQT.KRA.EKEE........EL......................EDGE....cG.RRRMAEE..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.66|      21|      32|    1044|    1064|       4
---------------------------------------------------------------------------
 1044- 1064 (35.33/24.87)	RIRDLRTAEKNLQTTASNIGK
 1077- 1097 (35.33/24.87)	RIQELTTALALRPDTAANAGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      66.19|      21|      33|     295|     315|       5
---------------------------------------------------------------------------
  301-  331 (24.38/12.18)	SRSETASTAAPTGLP........nqtsstpptsDTSEKL
  335-  373 (19.63/ 8.39)	SDREQAASVPGSSSPvenvdqvqaiadktpelcDTAKTD
  374-  393 (22.18/10.42)	NPSATVMITSAATLV..................DKETV.
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31022 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HLKEQAKRIKQNKKEHVREEHDREKDKYGREKERVRERDNRDHRKQGSADNYNHDVDELHGKERRRSGRDSHSRHRERHTSVKENEADHYKESHKAGRGHKESRQQRGLVREAEDEGREKRRRKEGDSEQTKRAEKEEELEDGECGRRRMAEEQ
2) INMNGGPRALFSHQSATPFGHLRAPTQVTGPSSHSQAQQSAPISQANAPSSIMNPTFEHPKVASSQPIPSQEAATDWVE
3) MANNPHYPGIQPFQHPNASSVDLPRGFAPSMNFQHRPPIQAPQSEQVAHLASQNFQ
4) VGRGATMNNGFPPQSYTPQLLQSMHHSVERPSQSNQGQHVPLGHPSLISQPNVP
5) WTMPEEMKIAREQAENASVQGLHAEGVVDASKVLSRSETASTAAPTGLPNQTSSTPPTSDTSEKLALTSDREQAASVPGSSSPVENVDQVQAIADKTPELCDTAKTDNPSATVMITSAATLVDKETVSTENSGDADDVSAKNTNQGSGTGPKESQKHVVDSERVDSQSEGKQIHQENI
846
128
1
58
267
999
206
56
111
444










Molecular Recognition Features






MoRF SequenceStartStop




1) GRKYYYNKV
253
261