<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31016

Description Uncharacterized protein
SequenceMEYLALPLLPPPPSSFPTVFVALSGSRKSKYVVTWALEKFGPEGNVGFKLLHIHPRITCVPTPMGNTIPISEVREDVVTAYRQEILCQSELVLTPFKKMFEKRKVAVEVLVIESNNVAAAIAEEVIRNSTERLVIGSSSRRFFSRRVDLCSAISALMPNFCTVYVVSKGKLSSVRPGYLDANASIRDDTSSSSSRPISESTDGTSSARDSSSSSISLPVRRLQHLTTAARQASAQMETNSVGSEVTMCMSMDVSRTNKSSMDTKSPSTPGLRDNEERKKPMSSSSSNLEYGNATHSRSSQQASSMCDNISEQSYTSNQVNLSFEVDKLKAELRHIQEMYTVAQTEIFDASRTLGELNQRRLEEARKLEEIKLKEYEAQELAEKEKQNFEKAKRDVESMREKVEKEIAQRREAERKATRDAQEKEKLEGTLGTPQLQYQHFTWEEIVAATSSFSDEMKIGMGACGAVYKCNMHHTTAAVKVLHSPESRLSKEFQQELEILSKIRHPHLVLLLGACPEQGALVYEYMENGNLEDRLFQVNNTPPLPWFERVRIAWEVASALVFLHKSKPKPIIHRDLKPANILLDHNFVSKVGDVGLSTMVQVDHLSTKYTIYKQTSPVGTISYMDPEYQRTGMISSKSDVYSFGIILLQLLTAKPPMALTHFVESAMDTNDGFLKILDRKAGNWPVEETRELTALALCCTELRAKDRPDLRDQVLPALESMKRVAEKARHSISEVPTQPPTHFLCPLLKDVMNEPCVAADGYTYDRHAIEKWFEGHNTSPMTDSPLNNKDLLPNYTLYTAIMEWRCRLK
Length808
PositionTail
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.438
Instability index48.94
Isoelectric point6.73
Molecular weight90910.60
Publications
PubMed=21873998

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31016
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     313.41|      91|     136|     486|     578|       1
---------------------------------------------------------------------------
  486-  562 (110.69/88.98)	.........................................................SRLSKEFQQELEILSK..I.RHPHLVL..LLGACPEQgALVYEYMENG.NLEDRLFQVNNTPPLPW.FERVRIAWEVASALVFL
  564-  701 (108.40/83.95)	KSKPKPIIHRDLKPAnilldhnfvskvgdvglstmvqvdhlstkytiykqtspvgtiSYMDPEYQRTGMISSKsdV.YSFGIILlqLLTAKPPM.ALTH.FVESAmDTNDGFLKILDRKAGNWpVEETRELTALALCCTEL
  702-  773 (94.32/66.44)	RAKDRPDLRDQVLPA........................................leS.MKRVAEKARHSISE..VpTQPPTHF..L...CP....LLKDVMNEP.CVAADGYTYDRHAIEKW.FE...............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.91|      20|      23|     172|     194|       2
---------------------------------------------------------------------------
  175-  194 (36.31/25.18)	RP..GYLDANASIRDDTSSSSS
  195-  216 (30.60/12.92)	RPisESTDGTSSARDSSSSSIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.18|      21|      23|     379|     401|       3
---------------------------------------------------------------------------
  379-  401 (25.22/31.22)	ELAEKeKQNFEKAKRDVESmREK
  405-  425 (33.97/27.10)	EIAQR.REAERKATRDAQE.KEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.03|      18|      23|     314|     336|       4
---------------------------------------------------------------------------
  314-  332 (25.16/27.69)	YTSNQVNLsFEVDKLKAEL
  339-  356 (29.87/14.60)	YTVAQTEI.FDASRTLGEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.48|      11|      23|     230|     240|       5
---------------------------------------------------------------------------
  230-  240 (18.71/12.14)	RQASAQMETNS
  255-  265 (18.77/12.21)	RTNKSSMDTKS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31016 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEKEKQNFEKAKRDVESMREKVEKEIAQRREAERKATRDAQEKEKLEGTL
2) NASIRDDTSSSSSRPISESTDGTSSARDSSSSSISLPVRRLQHLTTAARQASAQMETNSVGSEVTMCMSMDVSRTNKSSMDTKSPSTPGLRDNEERKKPMSSSSSNLEYGNATHSRSSQQASSMCDNISE
381
182
430
311










Molecular Recognition Features






MoRF SequenceStartStop




NANANA