<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31013

Description Uncharacterized protein
SequenceMINSDQVSRSHLPEVQKPKAPQTNWSEHANAFEDPSSRTKHLSSGFLYALESQKPRKSSDMAARSIAFPSVNAHTLAPPQIAKAWRALSSLSLNKTYLRPGITPPVDDGGTNGSYSARERSTVKVTCSTDGSFYSNNQQNQSQMGVPGTGRSFHSFPPPVPGDGKNFAEKFRRINDETREPETSSAHLNGVEKPFKNSTFAAEQLGSGEACLDEIDDDILQNIDVDQIMMEHYQSTSTPPSSVSSLPSRTPPVDRSASRREEECSLPPELCSNCSHGIKLGLCPEASTHLEQMKNMLIAISNELLDDDTDLSPDRIQELRQERLLLKKQIQQLEDHIRDKEKQKSQFLSSTATRASQYETPKSTNLRFDHPQTDSRAHFNEQGRYASDSWNMPKDSSFSVDRYGLSSAPVEREQYVPRIIEVTYTEGSNDQKWSSRDFPWTRKLEVSNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICQGITLVISPLVSLIQDQIMNLLQANIPATSLSAGMEWSEQLKIFQELSSEHSKYKLLYVTPEKVAQSDSLLRHLDNLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLLYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRNDCEKVAQKLQEFGHKAAFYHGSIEPTQRALVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRASCVLYYGYGDYIRVKHMISQVGVEQSPMANGYNRVASSGRLLETNTENLLRMVRYCENEVDCRRFLQLVHFGEKFDSTNCKRTCDNCSSSQSLIDKDVTLITRQLVELVKQTGERFSSSHILEVYRGSLNQMVKKHRHETLQFHGAGKHLTKLEVSRILHYLVTEDILVEDVRKSDMYGSVSSLLKVNKSKAASLFSGSQTIMMRFDFVLEIYLSSKRFPSSVKVLKPCKAAPTPAKAPLVSADAPPEDVNLSAIMYTALRKLRTLLVKEAPDGVMAYHIFGNATLQQMSKKIPRTKEELLEINGLGKAKVLKYGERLLETIESTVNEYYGTSKKEESMISPDSGKRRRDENISPNVTEEDDDFAESSSQSCKKTVRSKSSEVLHGECVAGDGVGMVMEKLDFDFEDEDGSEIRPEGRVLPW
Length1196
PositionUnknown
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.533
Instability index52.82
Isoelectric point6.73
Molecular weight134189.09
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31013
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     328.30|     104|     144|      18|     128|       1
---------------------------------------------------------------------------
   18-  128 (164.04/104.37)	PKAP..QTNWSEHANAFEDpSSRTKHLSSGFLYALEsqKPRKSSDMAARSIA.....FPSVNAHTLAP...PQI.AKAWRALSSLSLNKTYLrPGITPPVDDGgtnGSYSARERSTVKVTCS
  158-  272 (164.26/86.04)	PPVPgdGKNFAEKFRRIND.ETREPETSSAHLNGVE..KPFKNSTFAAEQLGsgeacLDEIDDDILQNidvDQImMEHYQSTSTPPSSVSSL.PSRTPPVDRS...ASRREEECSLPPELCS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      96.45|      21|     142|     682|     702|       2
---------------------------------------------------------------------------
  682-  702 (38.49/25.43)	YCLSRNDCEKVAQKLQEFGHK
  829-  848 (37.81/24.84)	YCENEVDCRRFLQ.LVHFGEK
  853-  867 (20.15/ 9.58)	NCKRTCDNCSSSQSL......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.78|      31|     142|     446|     480|       3
---------------------------------------------------------------------------
  446-  480 (46.99/40.96)	VSNkkvFGnHSFRPNQRE..IINATMSGSDVFVLMPT
  589-  621 (52.79/32.97)	VSQ...WG.HDFRPDYQSlgILKQKFPNIPVLALTAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.06|      23|      77|     936|     958|       4
---------------------------------------------------------------------------
  936-  958 (38.80/25.22)	LVTEDILVEDVRKSD.MYGSVSSL
 1014- 1037 (35.26/22.24)	LVSADAPPEDVNLSAiMYTALRKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.38|      47|     152|     882|     935|       6
---------------------------------------------------------------------------
  882-  935 (73.94/57.46)	LVKQTGERFSSSHIL.EVYRGSLNQMVKKHRHETLQFHGAGKhltklevSRILHY
 1041- 1088 (73.45/44.11)	LVKEAPDGVMAYHIFgNATLQQMSKKIPRTKEELLEINGLGK.......AKVLKY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31013 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IDVDQIMMEHYQSTSTPPSSVSSLPSRTPPVDRSASRREE
2) MINSDQVSRSHLPEVQKPKAPQTNWSEHANAFEDPS
3) TCSTDGSFYSNNQQNQSQMGVPGTGRSFHSFPPPVPGDGKNFAEKFRRINDETREPETSSAHLNGVEKPFKNSTF
4) YGTSKKEESMISPDSGKRRRDENISPNVTEEDDDFAESSSQSC
223
1
126
1104
262
36
200
1146










Molecular Recognition Features






MoRF SequenceStartStop




1) EIRPEGRVLPW
2) GFLYALE
1186
45
1196
51