<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31012

Description Uncharacterized protein
SequenceMGSIGGDELALDVDETIFVAVAEDVERSKTTLLWAARNFSGKKICLLYVHRPARPASWTHKKLAGGTFRKHAVKVIERVDKQKVDELMDSYLRLLSKTEVQTDKLCIAGQNIEEGIVDLIARHNIKWFVMGAASDKHYSWRMTDLKSKKAIFVCKNAPDSCHIWFLCKGYLIFTRTTNDDSSNTQTMPPLVQLDSDTETRRSEKLESSYMRRRLRYWRSLLEQDGEKDTGQLEREKVEPSPTAHSSSGSGSSFGEPVGPEPASPDLVGSDTLTPSNLQERKREGNVAREVHRYDKAMHDISQSERTVYGEARNGWKEDDSTMEALCKAKALDGLCSKELSRRKKLEELLEKEKDEVKMVIEQNNGFMRKLQIVQGDNLRLESQITKLQDLEKEHGEKFDTAMELLKSFRQKRDEIRIDHENAIKEVNALKRLIKGKSVESSGSEMLDYSFMEINEATNEFDPSWKLGEGKYGSVYKGNLQNLQVAVKMLPSYGSQNHFEFERKVEILSRLRHPHLVTIMGTCPESRSVIYQYVPNGSLEDCFSSANNVPALPWESRIRIASEICSALLFLHSNAPCIIHGNLKPSKILLDSNLVTKISDYGISQLIPVNGIDKSDPHVDPHYFVSGEMTLESDVYSFGMILLQLLTRRPLSGVLRDVKCAVENDNISAVLDNSGGDWPIARGKKLANIAIRCCKRNPLNRPDLAVVLRNIDRMKAPLSETSSYNSNQKPPRKPPSHYLCPIFQEVMKDPLIAADGFTYEAEAIREWLANGHDTSPMTNLKMEDCNLIPNHALHLAIQDWHNQW
Length803
PositionTail
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.535
Instability index46.02
Isoelectric point6.57
Molecular weight90948.49
Publications
PubMed=21873998

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31012
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.51|      21|      32|     695|     723|       1
---------------------------------------------------------------------------
  695-  717 (32.12/26.81)	RNPLNRPD...LAVVLRNIdrMKAPL
  727-  750 (36.39/13.15)	QKPPRKPPshyLCPIFQEV..MKDPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     114.34|      33|      39|     376|     408|       2
---------------------------------------------------------------------------
  340-  366 (32.01/19.35)	........SRRKKLEELLEK.EKDEVKMV.IEQN.NGF
  376-  408 (51.35/35.52)	DNLRL..ESQITKLQDLEKE.HGEKFDTA.MELL.KSF
  413-  450 (30.98/18.49)	DEIRIdhENAIKEVNALKRLiKGKSVESSgSEMLdYSF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31012 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KDTGQLEREKVEPSPTAHSSSGSGSSFGEPVGPEPASPDLVGSDTLTPSNLQERKREGNVAREVHRYDKAMHDISQSERTVYGEARNG
227
314










Molecular Recognition Features






MoRF SequenceStartStop




NANANA