<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31008

Description Uncharacterized protein
SequenceMNFIGVIEYPYLLFLDSRFVICYLSFESVAFCYEQETIELDTWMDNNNWRPSLPSGDPAMETGDWRAQLPPDSRQKIVNKIMETLKKHLPYSGPEGINELRRIAARFEEKIFSGAVNQTDYLRKISMKMLTMETKSQNQAGSSSTIPTANNGTSMDSLPTNQGNLLPGTLPNNQSQAPQPLLPQTMQNNNLLPGTLPNNQPQAPQPLLPQTMQNNPASGMMGSSALPSSMPPVSSMTHNNVASVVNQNSNMQNVAGMLQDSSGQHGLSSNMFPGSQRQMLGRPHTMSSQQQQQQQQPQSAQYLYQQQLQQQLLKQNFQSGNVPNPSSLLPSHIQQQQQQQNVMQPNQMHSSQQSGIPTSATQASSVSSAPLQGLHTNQQSSPQLPGQQTTTQAMLRQHQSSLLRQHPQSQQASGIHQQQTSLPQQSISPLQQQQSQMIRQQAANSSGIQQKQMMGQHLVGDMQQQQHQQRLLNQQNNMMNMQQQQQPLQHKQQPPAQQLMSQQNSLQATQQQPLGTQSNVTGLQQSNVTGLQQPQQQLLNSQVGNSNLQTNQQSVHMLSQPTGMQRTHQAGHGLFPSQGQQSQNQPSQQQMMPLQSHHQLGLQQQPNVLQQDVQQRLQSSGQVTGSLLPPQNVVDHQRQLYQSQRALPEMPSSSLDSTAQTENANGVDWQEEAFQKIKTMKEAYLPDLNEIYQRVTAKLQQDSLPQQQRSEQFEKLKQFKTMLERMIQFLSVSKTNIVPALKDKVTFYEKQIITFLNMHRPRKPVQQGQLPQSQMQPMQQQQSQNVQDQSHDSQTNPQMQSMSMPGSSGQRAQQSSLTNMQNSLLSSRPGVSAPQQNIPSSMPASSLESGQGNALNNGQQIAMGSMQQNTSQQQQVNNSSASAQTRQGMNAGRGMFQQHSLQGQRANYPLQQLKPGSQLPVTSPQLMQGQSPQMIQQHLSPQIDQKIAMSSVNKTGTPLQPANSPFIVPSPSTPLAPSPMQVDSEKPSGASSLSMGNTARQQATGMQGVVQSLAIGTPGISASPLLQEFITADGNNLNPLISISGKPSGAELPMERLIRVVKSISPQALSSAVSDIGSVVSMVDRIAGSAPGNGSRASVGEDLVAMTKCRLQARNFMTQEGMMATKKMKRHTTAMPLSVSSLEGSVGDNYKQFACSGTSDLESTATSDGKKARTETDHALLEEIKEINQRLLDTVVEISDDEDAADPSEGVTARKGCEGTTVKFSFIAVSLSPALKAHLSSTQMSPIQPLRLLVPCSYPNGSPSLLDKLPVETSKDNEDLSSKAMARFNILLRSLSQPMSLKDIAKTWDACARTVICEYAQQFGGGTFSSKYGTWEKYVAAS
Length1342
PositionTail
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.04
Grand average of hydropathy-0.704
Instability index69.01
Isoelectric point8.81
Molecular weight147268.56
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31008
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.61|      23|      23|     167|     189|       1
---------------------------------------------------------------------------
  167-  189 (45.23/12.91)	PGTLPNNQSQAPQPLLPQTMQNN
  193-  215 (45.38/12.98)	PGTLPNNQPQAPQPLLPQTMQNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            10|     693.38|      70|      71|     372|     441|       2
---------------------------------------------------------------------------
  252-  315 (69.60/16.76)	QNVAGMLQ...DS........SGQ..HGLS.S.NMF....PGSQ.......RQ..MLgRPHTMSSQ...Q..QQQQQQPQ.SAQ.Y.LYQ.Q...QlQQQLLKQ.
  316-  354 (48.28/ 8.57)	.....NFQ...SG.N.....VP....................NP.......SS..LL.PSH.........IQQQQ...QQ.QNVmQ.PNQ.M...H.SSQ...QS
  372-  441 (129.30/39.72)	QGLHTNQQ...SSPQ.....LPGQ..QTTT.Q.AML....RQHQ.......SS..LL.RQHPQSQQAS.GIHQQQTSLPQ.QSI.S.PLQ.Q...Q.QSQMIRQQ
  477-  542 (92.23/25.46)	NMMNMQQQ...QQPL.....QHKQ..QPPA.Q.QLM....SQ.Q.......NS..L...QATQ.QQPL.GTQSNVTGLQQ.SNV.T.GLQ.Q...P.QQQLLNSQ
  546-  612 (77.99/19.99)	SNLQTNQQ...SVHM.....L..S..QPT....GMQ....RTHQ.......AGhgLF...PSQGQQSQ.NQPSQQQMMPL.QSH.H.QLGlQ...Q.QPNVLQQD
  615-  694 (53.37/10.52)	QRL....Q...SSGQvtgslLPPQ..NVVDhQ.RQL....YQSQralpempSS..SL.DSTAQTENAN.GVDWQEEAF...QKI.K.TMK.EaylP.DLNEIYQR
  700-  751 (46.48/ 7.87)	Q.....QD...S........LPQQ..QRSE.QfEKL....KQFK.......T...ML.ERM.........I..QFLSVSK.TNI.V.PAL.K...D.KVTFYEKQ
  754-  813 (66.91/15.73)	TFLNMHRP...RKPV.....QQGQlpQSQM.Q.PM.....QQQQ.......SQ.......NVQDQS.....HDSQTN.PQmQSM.SmPGS.S...G.Q....RAQ
  845-  912 (58.31/12.42)	SSLESGQG...NALN......NGQ..QIAM.G.SMQqntsQQQQ....vnnSS..AS.AQTRQGMNAGrGMFQQHSLQGQ.RAN.Y.PLQ.Q.............
  913-  967 (50.90/ 9.57)	..LKPGSQlpvTSPQ.....L..M..QGQS.P.QMI....QQHL.......S.........PQIDQKI.AM.....SSVN.KTG.T.PLQ.P...A.NSPFI...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.14|      22|      73|    1191|    1214|       3
---------------------------------------------------------------------------
 1191- 1214 (33.46/31.56)	LLDTV.VEISDDEDaaDPSEGVTAR
 1265- 1287 (32.67/23.36)	LLDKLpVETSKDNE..DLSSKAMAR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.61|      14|      18|      41|      54|       4
---------------------------------------------------------------------------
   41-   54 (31.06/18.81)	DTWMDNNNWRPSLP
   57-   70 (28.54/16.68)	DPAMETGDWRAQLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     217.83|      57|      83|     978|    1034|       5
---------------------------------------------------------------------------
  978- 1034 (100.37/47.81)	SPMQVDSEK.PSGASSL..SMGNTAR..........QQATGMQGVVQSL....AIGTPGI.SASPL...........LQ..EFITADG
 1038- 1121 (61.01/26.37)	NPLISISGK.PSGA.EL..PMERLIRvvksispqalSSAVSDIGSVVSMvdriAGSAPGNgSRASVgedlvamtkcrLQarNFMTQEG
 1126- 1169 (56.45/23.89)	KKMKRHTTAmPLSVSSLegSVGDNYK..........QFAC.....................SGTSD...........LE..STATSDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.81|      19|      20|      85|     103|       6
---------------------------------------------------------------------------
   71-   84 (16.22/ 6.41)	.....PDSRQKIVNK...IMET
   85-  103 (32.79/21.04)	LKKHLPYSGPEGINE...LRRI
  107-  125 (20.81/10.46)	FEEKI.FSG..AVNQtdyLRKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.85|      14|     609|     218|     232|       7
---------------------------------------------------------------------------
  218-  232 (24.87/17.16)	SGMMGSSA....LPSSMpP
  826-  843 (22.98/10.06)	SSRPGVSApqqnIPSSM.P
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31008 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LKQNFQSGNVPNPSSLLPSHIQQQQQQQNVMQPNQMHSSQQSGIPTSATQASSVSSAPLQGLHTNQQSSPQLPGQQTTTQAMLRQHQSSLLRQHPQSQQASGIHQQQTSLPQQSISPLQQQQSQMIRQQAANSSGIQQKQMMGQHLVGDMQQQQHQQRLLNQQNNMMNMQQQQQPLQHKQQPPAQQLMSQQNSLQATQQQPLGTQSNVTGLQQSNVTGLQQPQQQLLNSQVGNSNLQTNQQSVHMLSQPTGMQRTHQAGHGLFPSQGQQSQNQPSQQQMMPLQSHHQLGLQQQPNVLQQDVQQR
2) MHRPRKPVQQGQLPQSQMQPMQQQQSQNVQDQSHDSQTNPQMQSMSMPGSSGQRAQQSSLTNMQNSLLSSRPGVSAPQQNIPSSMPASSLESGQGNALNNGQQIAMGSMQQNTSQQQQVNNSSASAQTRQGMNAGRGMFQQHSLQGQRANYPLQQLKPGSQLPVTSPQLMQGQSPQMIQQHLSPQIDQKIAMSSVNKTGTPLQPANSPFIVPSPSTPLAPSPMQVDSEKPSGASSLSMGNTARQQATGMQG
3) QSSGQVTGSLLPPQNVVDHQRQLYQSQRALPEMPSSSLDSTAQTENANGVDWQEE
4) SMKMLTMETKSQNQAGSSSTIPTANNGTSMDSLPTNQGNLLPGTLPNNQSQAPQPLLPQTMQNNNLLPGTLPNNQPQAPQPLLPQTMQNNPASGMMGSSALPSSMPPVSSMTHNNVASVVNQNSNMQNVAGMLQDSSGQHGLSSNMFPGSQRQMLGRPHTMSSQQQQQQQQPQSAQYLYQQQ
313
758
618
126
616
1008
672
307










Molecular Recognition Features






MoRF SequenceStartStop




NANANA