<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP31002

Description Uncharacterized protein
SequenceMVVPGRRTVWDGVIELTKMAQEQCVDARLWASHLSASLKPFVEFPSTELAEVLVSYICWDNNLPLLWKFLERAMSLNLVSPLVLLALLAHRVVPNRSTQSAAYRIYLELLKRNIFRIKDHITGPHYENVMDSVANILRLPELFRLETSKPGVLLVEFVFKMVSLLLDACLRDEGLIEPSQDSSSQWLIKSQDMEIDAPERYNEKNGSHEKLQTLNTIMAIEMVAEFLRNTVISRVLYLVSSNRASNWHEFVRRVQVLGENSMALRSSKVLSSGDLLQLISNRRFGYSDDSKVVSLRKSNAIVDFGSLASFAGLCHGASLSSLWLPLDLVFEDAMDGYQVNPTSAIEIITGLAKTLKEINGSTWHDTFLGLWIAALRLVQRERDPIEGPIPRLDTRLCMSLCIVPLVVANLIEEGENEFVMEKLRDDLITSLQVLGEFPGLLAPPQCVVSAANKAATKVIMFLSGGNVGKSCSDVINMKDMPINCSGNMRHLIVEACIARNILDTSAYSWAGYVNGRINQIPHNLPSEVPCWSSFVKGAPLNAAMVNALVSVPASSLVEIEKVYEVAVKGSDDEKISAATVLCGASLTRGWNIQEHTVEFLTRLLSPPVPADYSAAESHLIGYACMLNVVIFGIGSVDSIQIFSLHGMVPQLACSLMPICEAFGSYTPSVSWTLPSGEEISAYSVFSNAFTLLLKLWRFNHPPIEHGVGDVPTVGSQLTPEHLLSVRNSHLVSSETLNRDRNRKRLSEVARSASSQPVFVDSFPKLKIWYRQHQRCIASTLSGLTPGSPVHQTVEALLNMMFRKVRGSQTLNPVNSGTSSSSGAASEDIIPRPEFPAWDILKAVPYVVDAALTACTHGRLSPRELATGLKDLTDFLPASLATIVSYFSAEVSRGVWKPVFMNGMDWPNPAANLSNVEEFIKKILATTGVDIPSLAPGGSSPATLPLPLAAFVSLTITYKIDKASERFLNLAGPALECLAAGCPWPCMPIVASLWTQKAKRWFDFLVFSASRTVFLHNPDAVVQLLRNCFSATLGLNAAPMSNDGGVGALLGHGFGSHFYGGISPVAPGILYLRMYRALRDTVSVTEEIFSLLIHSVEDIAQNRLSKENLKRLKTVKNGSRYGQSSLATAMTQVKLAASLSASLVWLTGGLGVVHLLIKETIPSWFLSVDKSDQEQRPSDLVAELRGHALAYFVVLCGAFAWGVDSRSAASKRRQGILGSHLQFLANALDGKISVGCETATWRAYVSGLVSLMVSCLPRWVAEIDAEVLKSLSNGLRQWGKDELAILLLSMGGVETMGDAVDFIIHLRS
Length1307
PositionTail
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.08
Grand average of hydropathy0.153
Instability index45.95
Isoelectric point6.50
Molecular weight143073.62
Publications
PubMed=21873998

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP31002
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     380.72|     124|     161|     977|    1126|       1
---------------------------------------------------------------------------
  977- 1126 (189.59/151.44)	LAAGCPW..PCMPIVASLWTQKAKRWFdflvFSASRTVFLHNPDAVVQLLRN.........CFSATLGLN...AAPMSNDGgvgallghGFGSHFY.......GGISpVAPGILYLRMYraLRDTVSVteeIFSLLIHSVEDIaqnrlskeNLKRLKTVKNGSR.YGQSSLA
 1138- 1283 (191.12/104.67)	LSASLVWltGGLGVVHLLIKETIPSWF....LSVDKSDQEQRPSDLVAELRGhalayfvvlCGAFAWGVDsrsAASKRRQG........ILGSHLQflanaldGKIS.VGCETATWRAY..VSGLVSL...MVSCLPRWVAEI........DAEVLKSLSNGLRqWGKDELA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     211.06|      61|      71|     683|     752|       2
---------------------------------------------------------------------------
  645-  681 (41.76/19.58)	.......................HGM...VPQLACSLMP..ICEAFGSY...tpsvSWTLPSGE......EI..SA
  683-  752 (91.67/72.32)	SVFSNAFTlLLKLWRFNHPP.IEHGV.GDVPTVGSQLTPEHLLSVRNSHLVS....SETLNRDRnrkrlsEVarSA
  756-  811 (77.63/41.05)	PVFVDSFP.KLKIWYRQHQRcIASTLsGLTPGSPVHQTVEALLNMMFRKVRG....SQTLN...............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     198.28|      60|     827|      10|      71|       4
---------------------------------------------------------------------------
   10-   71 (101.94/74.74)	WD...GVIELTKMAQEQCVDARLWASHLSASLKPFVEFPSTELAEVlVSYICWDNNLPlLWK..FLE
  837-  901 (96.34/62.07)	WDilkAVPYVVDAALTACTHGRLSPRELATGLKDLTDFLPASLATI.VSYFSAEVSRG.VWKpvFMN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP31002 with Med33 domain of Kingdom Viridiplantae
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