<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30996

Description Uncharacterized protein
SequenceMLHPSSSMFAHREVQLDMMVLESDDVADAISKAVQDHGISELVIGASSSIIFSWKLKRSNLSSRISDVTPRFCTVHVISRGKLLNVRKSDVDIETSIADDRSESQFSSSSQSGSVSSTSSHQFSSTSLLYQRVQALSTVNQKVGTNMGTKKSIDTHHSRAASLDVDEPNQRGYYRTNSSLVRYKESDIHSRRSSLTEEGSSSGCYSDPTSSSSQMNKDFELEKLKIELRHIKGMYAVAQSEVLDATKKMQDLNQRRSEEATRLKNLTIREEYAEEAVEMERERQEEAENEAELVRECVEREAEERLEAEARAEEVRKEKQRLEDALEGGPLQRQQYMKFEWEDIVQATSSFSDELKIGSGGYGSVYRCNLHHTTVAVKVLHSDKSSLTKQFHQELEILSKIRHPHLLLLLGACPERGSLVYEYMHNGNLEERLMKRRPNTDAPQQPLLWFERFRIAWEIASALYFLHTNEPRPIVHRDLKPANILLDRNNVSKIGDVGLSKMVNLDPSHASTVFNETGPVGTFFYIDPEYQRTGVVTPESDIYAFGIILLQLATARSAMGLAHSVEKALRDQTGNFSEILDKTAGDWPVKEAKEMVMIGLRCAEMRKRDRPYLGKEILPVLERLKDIACDARNMFSETVNKHNNHAPSHFYCPITKDVMENPCVASDGYTYEKRAIKEWLEKNHKSPMTDSPFPNQTLLPNHSLLFAIKEWISSHTIK
Length718
PositionTail
OrganismBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.583
Instability index49.20
Isoelectric point6.09
Molecular weight81519.94
Publications
PubMed=21873998

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30996
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.35|      22|      30|     157|     185|       1
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  157-  179 (37.37/26.26)	HSRAASLdVDEPNQRGYY..RTNSS
  189-  212 (36.98/12.28)	HSRRSSL.TEEGSSSGCYsdPTSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.44|      11|      14|     282|     292|       2
---------------------------------------------------------------------------
  282-  292 (18.58/12.26)	ERQEEAENEAE
  299-  309 (17.86/11.48)	EREAEERLEAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     305.41|      73|     180|     327|     415|       3
---------------------------------------------------------------------------
  327-  400 (120.06/83.34)	EGGP.LQRQQYMKFEWeDIV.QATSSFSDELKIGSGGYGSVYRCNLHHTTVAVKVLHSDKSSLTKQFHQE.LEILSK
  516-  582 (103.34/65.47)	ETGP.VGTFFYIDPEY.....QRTGVVTPESDIYA..FG.IILLQLATARSAMGLAHSVEKALRDQTGNF.SEILDK
  616-  681 (82.01/66.37)	EILPvLER...LK....DIAcDARNMFSETVNKHNNHAPSHFYCPITKDVMENPCVASDGYTYEKRAIKEwLE....
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30996 with Med32 domain of Kingdom Viridiplantae
Unable to open file!